Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FSZ17_RS08275 Genome accession   NZ_CP042593
Coordinates   1749974..1751791 (+) Length   605 a.a.
NCBI ID   WP_057774194.1    Uniprot ID   A0A5B8Z2I2
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744974..1756791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS08255 (FSZ17_08255) spxA 1745118..1745513 (+) 396 WP_057774200.1 transcriptional regulator SpxA -
  FSZ17_RS08260 (FSZ17_08260) mecA 1745774..1746439 (+) 666 WP_057774198.1 adaptor protein MecA -
  FSZ17_RS08265 (FSZ17_08265) cls 1746543..1748060 (+) 1518 WP_057774830.1 cardiolipin synthase -
  FSZ17_RS08270 (FSZ17_08270) - 1748413..1749606 (+) 1194 WP_057774196.1 competence protein CoiA -
  FSZ17_RS08275 (FSZ17_08275) pepF 1749974..1751791 (+) 1818 WP_057774194.1 oligoendopeptidase F Regulator
  FSZ17_RS08280 (FSZ17_08280) - 1752275..1753162 (-) 888 WP_057774192.1 ClpXP adapter SpxH family protein -
  FSZ17_RS08285 (FSZ17_08285) - 1753159..1753566 (-) 408 WP_057774190.1 globin -
  FSZ17_RS08290 (FSZ17_08290) - 1753926..1754564 (-) 639 WP_057774188.1 lytic transglycosylase domain-containing protein -
  FSZ17_RS08295 (FSZ17_08295) - 1754580..1755170 (-) 591 WP_057774186.1 CYTH domain-containing protein -
  FSZ17_RS08300 (FSZ17_08300) - 1755340..1755714 (+) 375 WP_228460306.1 hypothetical protein -
  FSZ17_RS08305 (FSZ17_08305) - 1755812..1756441 (+) 630 WP_057774183.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69750.09 Da        Isoelectric Point: 4.8294

>NTDB_id=378582 FSZ17_RS08275 WP_057774194.1 1749974..1751791(+) (pepF) [Cytobacillus dafuensis strain FJAT-25496]
MGNETAVKKLPSRSEIAVEDTWRLEDIFSNDEAWEKEYNDVNGLIPGAKEFQSKLGESADLLFEALQYQDHLLERLGKLY
TYAHMRYDQDTTNSFYQGMDSRIKNLYAQAASGLAYIVPEILAVDEEKINGFLEENNELKLYKQSLEEINLQRPHVLSAE
QEALLAQASEVFDASSNTFGMLNNADLEFPTIKDENGEEVEVTHGRYSRFLESDDQRVRHDAFKAVYDTYGKFRNTFAST
LGGNVKKNNFNAKIRNYQSARHSALSANDIPESVYDNLVKTVNDHLHLLHRYIKLRKKVLGIQELHMYDLYTPLVKDVKM
EIKYEEAKDIILKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGAYGTNPFILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKFQPYPYGNYSIFVAEVASTCNESLLNDYLLKTIDDDKKRLFLLNHYLEGFRGTVFRQTMFAEFEHMIHQKAQ
NNEAITAEALTNDYYELNKKYFGEENLVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKAIEDACKVFEEKLDEMEKLLG

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=378582 FSZ17_RS08275 WP_057774194.1 1749974..1751791(+) (pepF) [Cytobacillus dafuensis strain FJAT-25496]
ATGGGAAACGAAACAGCAGTTAAAAAACTTCCTAGCAGAAGTGAAATCGCAGTTGAGGATACATGGAGGCTTGAGGATAT
ATTTTCGAACGATGAGGCTTGGGAAAAAGAATATAATGATGTGAACGGATTAATTCCAGGTGCAAAAGAATTTCAGAGCA
AGCTTGGGGAAAGTGCTGATTTATTATTCGAAGCACTTCAATATCAAGATCATCTTTTAGAACGCCTTGGTAAGCTCTAT
ACATATGCTCATATGAGATATGATCAAGACACGACGAATTCTTTTTACCAAGGGATGGATAGTCGGATAAAAAATTTATA
CGCACAGGCAGCAAGCGGTTTAGCCTATATTGTGCCAGAAATTCTAGCTGTAGATGAAGAGAAGATTAATGGATTTCTAG
AAGAAAATAATGAGCTAAAGCTATATAAGCAGTCATTAGAGGAAATTAATCTTCAGCGTCCACATGTGTTATCAGCTGAA
CAGGAGGCATTACTTGCTCAAGCTTCTGAAGTATTTGATGCTTCAAGCAATACATTTGGAATGCTAAATAATGCTGATCT
TGAATTCCCCACTATTAAGGATGAGAATGGAGAGGAAGTAGAAGTTACTCATGGTCGCTACAGTCGATTCCTTGAAAGTG
ATGACCAAAGAGTACGGCATGATGCTTTCAAAGCTGTATATGACACATACGGAAAATTTCGCAATACATTTGCAAGTACA
TTAGGCGGAAACGTAAAAAAGAATAATTTCAATGCAAAAATTAGGAACTATCAATCAGCACGCCATTCAGCATTATCGGC
AAACGATATTCCTGAATCGGTGTATGATAACCTTGTAAAAACAGTTAATGATCATTTACATTTATTGCACCGATATATAA
AACTTCGCAAAAAAGTACTCGGTATACAAGAACTTCACATGTACGATCTTTATACGCCTCTTGTAAAAGATGTCAAAATG
GAAATTAAATATGAAGAAGCGAAGGATATTATACTAAAAGGTTTGGCACCACTGGGTGAGGATTATTTAAATGTGTTAAA
AGAAGGCTTTGAAAACCGATGGGTAGATGTTCATGAAAATAAAGGGAAGCGAAGCGGAGCATATTCATCAGGTGCTTATG
GAACAAATCCATTCATACTAATGAATTGGCAGGATAATGTTAATAATCTTTTCACACTTGCTCATGAATTTGGTCATTCC
GTGCATAGCTATTACACACGAAAGTTTCAACCTTATCCATATGGAAATTATTCTATTTTCGTTGCTGAGGTTGCATCAAC
ATGCAATGAATCACTTTTAAACGATTATTTATTGAAAACAATTGATGACGATAAAAAGAGACTATTTTTACTAAACCATT
ACCTAGAAGGCTTTAGAGGTACAGTTTTCCGCCAAACGATGTTTGCGGAATTTGAGCATATGATCCATCAAAAGGCACAA
AATAATGAAGCTATAACCGCTGAAGCATTAACAAATGACTATTATGAGCTCAATAAGAAGTATTTTGGTGAAGAGAATCT
TGTTATTGATGAAGAAATTGGTTTAGAGTGGTCTAGAATTCCTCATTTCTATTACAACTATTATGTTTATCAATATGCAA
CTGGCTTTAGTGCAGCAACTGCATTAAGTAAACAAATTTTAGAAGAAGGGCAGCCTGCAGTTGATCGTTATATTGAGTTC
TTGAAATCTGGCAGCTCTGATTACCCAATTGAAGTGTTAAAGAAAGCTGGAGTCGATATGACAAGCTCTAAGGCAATTGA
GGATGCGTGTAAAGTATTTGAAGAAAAGCTTGATGAAATGGAAAAACTGTTAGGGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8Z2I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.412

98.347

0.486

Multiple sequence alignment