Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FSZ17_RS00555 Genome accession   NZ_CP042593
Coordinates   108245..109624 (+) Length   459 a.a.
NCBI ID   WP_057776511.1    Uniprot ID   A0A5B8YZR4
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103245..114624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS00535 (FSZ17_00535) - 103562..104023 (+) 462 WP_057776507.1 CtsR family transcriptional regulator -
  FSZ17_RS00540 (FSZ17_00540) - 104052..104597 (+) 546 WP_057776508.1 UvrB/UvrC motif-containing protein -
  FSZ17_RS00545 (FSZ17_00545) - 104600..105679 (+) 1080 WP_057776509.1 protein arginine kinase -
  FSZ17_RS00550 (FSZ17_00550) clpC 105684..108137 (+) 2454 WP_057776510.1 ATP-dependent protease ATP-binding subunit ClpC -
  FSZ17_RS00555 (FSZ17_00555) radA 108245..109624 (+) 1380 WP_057776511.1 DNA repair protein RadA Machinery gene
  FSZ17_RS00560 (FSZ17_00560) disA 109628..110701 (+) 1074 WP_057776512.1 DNA integrity scanning diadenylate cyclase DisA -
  FSZ17_RS00565 (FSZ17_00565) - 110908..111990 (+) 1083 WP_057776513.1 PIN/TRAM domain-containing protein -
  FSZ17_RS00570 (FSZ17_00570) ispD 112032..112718 (+) 687 WP_057776514.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FSZ17_RS00575 (FSZ17_00575) ispF 112748..113230 (+) 483 WP_057776515.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49838.28 Da        Isoelectric Point: 7.1320

>NTDB_id=378567 FSZ17_RS00555 WP_057776511.1 108245..109624(+) (radA) [Cytobacillus dafuensis strain FJAT-25496]
MAKRKTKFMCQECGYESPKWMGKCPGCGEWNKMVEEVEKSATTRRGAFAHSQGATILSKATPITTVETVSEPRIYTDMNE
LNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLANKNHSVLYISGEESLRQTKLRADRLGVSSENLLVYSETSLEEI
SRTIDSVNPSFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTRPTDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWTGPKGIELIGVGSVSEALKVTLGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=378567 FSZ17_RS00555 WP_057776511.1 108245..109624(+) (radA) [Cytobacillus dafuensis strain FJAT-25496]
ATGGCCAAAAGGAAAACAAAATTTATGTGTCAGGAATGTGGGTATGAGTCTCCAAAGTGGATGGGGAAATGTCCTGGTTG
CGGTGAGTGGAATAAAATGGTTGAGGAGGTGGAAAAATCAGCAACAACAAGAAGGGGTGCATTTGCTCATTCACAAGGAG
CGACTATTCTCTCAAAAGCTACACCTATTACGACGGTTGAGACAGTGAGTGAACCTCGCATCTATACCGACATGAATGAA
CTAAACCGTGTTCTTGGAGGAGGGGTGGTCAAGGGGTCCTTAGTACTGATTGGTGGTGACCCAGGGATAGGAAAATCAAC
ATTGCTATTGCAGGTTTCATCCCAATTGGCTAATAAAAATCATTCCGTTTTATATATATCTGGTGAAGAATCACTTAGGC
AGACGAAACTGCGTGCTGATCGACTAGGCGTTTCATCTGAGAATTTATTGGTTTATTCGGAAACGAGTCTAGAGGAGATA
AGTCGGACAATCGACAGCGTCAATCCGAGCTTCGTCATTATTGACTCCATTCAGACGATTTTTCACCCAGAGGTAACCTC
GGCTCCAGGAAGCGTTTCTCAAGTAAGAGAATGTACAGCAGAATTAATGAGAATTGGAAAAACAAAAGGAATTGCTATTT
TTATTGTCGGGCATGTTACAAAGGAAGGTTCCATTGCTGGTCCAAGATTATTAGAGCATATGGTTGATACAGTTCTATAC
TTCGAGGGAGAGCGGCATCATACATACCGAATTTTGCGTGCGGTAAAAAATCGATTTGGATCGACAAACGAGATGGGAAT
TTTTGAAATGAAGGAGTTTGGTTTAGAAGAAGTAGAGAACCCTTCAGAAATTTTCCTTGAGGAACGCTCACAGGGAGCAG
CAGGATCAACAGTTGTAGCCTCTATGGAAGGGACTCGCCCGGTTCTTGTGGAAATTCAAGCCTTAATATCACCGACAAGC
TTCGGAAATCCGAGAAGAATGGCTACCGGAATTGATCATAATCGTGTTCCACTTTTAATGGCGGTGCTTGAAAAGCGAGT
GGGGATGCTTTTGCAAAACCAGGATGCTTATTTAAAGGTAGCTGGGGGAGTAAAGTTAGATGAGCCAGCGATTGATTTAG
CTATTGCAGTCAGCATTGCTTCAAGCTTTCGCGACAAACCGACGAGACCGACAGACTGTATTATCGGGGAAGTAGGTTTA
ACTGGAGAGGTTAGAAGGGTATCAAGAATAGAGCAGCGTGTTCAGGAAGCAGCAAAACTAGGTTTTGAAAGGGTTATTTT
ACCGGCAAATAACCTTGGGGGCTGGACTGGGCCAAAAGGAATTGAGCTGATTGGAGTAGGTTCTGTTAGTGAGGCATTAA
AAGTGACATTAGGAGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8YZR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.826

100

0.78
  radA Streptococcus mitis NCTC 12261

62.335

98.911

0.617
  radA Streptococcus pneumoniae Rx1

62.335

98.911

0.617
  radA Streptococcus pneumoniae D39

62.335

98.911

0.617
  radA Streptococcus pneumoniae R6

62.335

98.911

0.617
  radA Streptococcus pneumoniae TIGR4

62.335

98.911

0.617
  radA Streptococcus mitis SK321

62.115

98.911

0.614

Multiple sequence alignment