Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HB740_RS18045 Genome accession   NZ_CP050325
Coordinates   3914045..3914410 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain DVT425     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3909045..3919410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB740_RS18030 (HB740_18055) pilK 3910389..3911264 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  HB740_RS18035 (HB740_18060) pilJ 3911325..3913373 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  HB740_RS18040 (HB740_18065) - 3913458..3913994 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  HB740_RS18045 (HB740_18070) pilH 3914045..3914410 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  HB740_RS18050 (HB740_18075) pilG 3914457..3914864 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  HB740_RS18055 (HB740_18080) gshB 3915119..3916072 (+) 954 WP_003100943.1 glutathione synthase -
  HB740_RS18060 (HB740_18085) - 3916219..3917112 (+) 894 WP_003162015.1 energy transducer TonB -
  HB740_RS18065 (HB740_18090) - 3917161..3917730 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  HB740_RS18070 (HB740_18095) ruvX 3917730..3918164 (+) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  HB740_RS18075 (HB740_18100) pyrR 3918276..3918788 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=378473 HB740_RS18045 WP_003084587.1 3914045..3914410(-) (pilH) [Pseudomonas aeruginosa strain DVT425]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=378473 HB740_RS18045 WP_003084587.1 3914045..3914410(-) (pilH) [Pseudomonas aeruginosa strain DVT425]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364