Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FR760_RS08500 Genome accession   NZ_CP042571
Coordinates   1749829..1750455 (+) Length   208 a.a.
NCBI ID   WP_151884349.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain E5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744829..1755455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR760_RS08480 (FR760_08480) - 1745228..1746988 (-) 1761 WP_023305819.1 Lon protease family protein -
  FR760_RS08485 (FR760_08485) matP 1747175..1747627 (+) 453 WP_121909493.1 macrodomain Ter protein MatP -
  FR760_RS08490 (FR760_08490) ompA 1747693..1748745 (-) 1053 WP_017694761.1 porin OmpA -
  FR760_RS08495 (FR760_08495) sulA 1749102..1749611 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  FR760_RS08500 (FR760_08500) sxy/tfoX 1749829..1750455 (+) 627 WP_151884349.1 TfoX/Sxy family DNA transformation protein Regulator
  FR760_RS08505 (FR760_08505) yccS 1750412..1752574 (-) 2163 WP_023305820.1 YccS family putative transporter -
  FR760_RS08510 (FR760_08510) - 1752593..1753039 (-) 447 WP_023299745.1 YccF domain-containing protein -
  FR760_RS08515 (FR760_08515) helD 1753162..1755216 (+) 2055 WP_032676335.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24048.64 Da        Isoelectric Point: 9.4592

>NTDB_id=378472 FR760_RS08500 WP_151884349.1 1749829..1750455(+) (sxy/tfoX) [Enterobacter hormaechei strain E5]
MKKIFYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=378472 FR760_RS08500 WP_151884349.1 1749829..1750455(+) (sxy/tfoX) [Enterobacter hormaechei strain E5]
ATGAAAAAGATATTTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.416

97.115

0.567

Multiple sequence alignment