Detailed information NTG0378433

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB740_RS04685
• Genome accession: NZ_CP050325
• Coordinates: 1020003..1021007 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT425
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1015003..1026007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB740_RS04655 (HB740_04655)	fghA	1015095..1015946 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HB740_RS04660 (HB740_04660)	ispF	1016017..1016490 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB740_RS04665 (HB740_04665)	truD	1016487..1017554 (+)	1068	WP_047105126.1	tRNA pseudouridine(13) synthase TruD	-
HB740_RS04670 (HB740_04670)	surE	1017542..1018291 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB740_RS04675 (HB740_04675)	-	1018324..1018959 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB740_RS04680 (HB740_04680)	-	1019005..1019898 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB740_RS04685 (HB740_04685)	rpoS	1020003..1021007 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB740_RS04690 (HB740_04690)	fdxA	1021434..1021757 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HB740_RS04695 (HB740_04695)	mutS	1021824..1024391 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HB740_RS04700 (HB740_04700)	-	1024517..1025524 (-)	1008	WP_174707812.1	PD40 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=378433 HB740_RS04685 WP_003113871.1 1020003..1021007(+) (rpoS) [Pseudomonas aeruginosa strain DVT425]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=378433 HB740_RS04685 WP_003113871.1 1020003..1021007(+) (rpoS) [Pseudomonas aeruginosa strain DVT425]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653