Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   FR761_RS17685 Genome accession   NZ_CP042556
Coordinates   3624662..3625480 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain E47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3619662..3630480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR761_RS17670 (FR761_17670) pilE 3619879..3620304 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  FR761_RS17675 (FR761_17675) pilY2 3620301..3620783 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  FR761_RS17680 (FR761_17680) pilY1 3620796..3624650 (-) 3855 WP_198054632.1 PilC/PilY family type IV pilus protein Machinery gene
  FR761_RS17685 (FR761_17685) pilX 3624662..3625480 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FR761_RS17690 (FR761_17690) pilW 3625477..3626478 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  FR761_RS17695 (FR761_17695) pilV 3626479..3627039 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  FR761_RS17700 (FR761_17700) fimU 3627033..3627506 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FR761_RS17705 (FR761_17705) ispH 3627676..3628626 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FR761_RS17710 (FR761_17710) gmk 3628749..3629378 (+) 630 WP_000015937.1 guanylate kinase -
  FR761_RS17715 (FR761_17715) rpoZ 3629451..3629729 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FR761_RS17720 (FR761_17720) - 3629768..3629898 (+) 131 Protein_3430 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=378433 FR761_RS17685 WP_000149376.1 3624662..3625480(-) (pilX) [Acinetobacter baumannii strain E47]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=378433 FR761_RS17685 WP_000149376.1 3624662..3625480(-) (pilX) [Acinetobacter baumannii strain E47]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment