Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | FR761_RS08955 | Genome accession | NZ_CP042556 |
| Coordinates | 1869135..1869515 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain E47 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1864135..1874515
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR761_RS08925 (FR761_08925) | kdsB | 1865038..1865799 (+) | 762 | WP_000680704.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| FR761_RS08930 (FR761_08930) | - | 1865811..1866791 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| FR761_RS08935 (FR761_08935) | - | 1866803..1867144 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| FR761_RS08940 (FR761_08940) | - | 1867162..1867935 (+) | 774 | WP_000497303.1 | TatD family hydrolase | - |
| FR761_RS08945 (FR761_08945) | - | 1867973..1868581 (+) | 609 | WP_000375839.1 | TetR/AcrR family transcriptional regulator | - |
| FR761_RS08950 (FR761_08950) | - | 1868591..1869145 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| FR761_RS08955 (FR761_08955) | xcpV | 1869135..1869515 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| FR761_RS08960 (FR761_08960) | xcpW | 1869515..1870216 (+) | 702 | WP_000594576.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FR761_RS08965 (FR761_08965) | gspK | 1870216..1871175 (+) | 960 | WP_000301465.1 | type II secretion system minor pseudopilin GspK | - |
| FR761_RS08970 (FR761_08970) | - | 1871405..1872001 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FR761_RS08975 (FR761_08975) | ung | 1872052..1872765 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| FR761_RS08980 (FR761_08980) | - | 1872762..1873886 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FR761_RS08985 (FR761_08985) | tadA | 1873893..1874396 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=378419 FR761_RS08955 WP_000836911.1 1869135..1869515(+) (xcpV) [Acinetobacter baumannii strain E47]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=378419 FR761_RS08955 WP_000836911.1 1869135..1869515(+) (xcpV) [Acinetobacter baumannii strain E47]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |