Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HB742_RS26865 Genome accession   NZ_CP050324
Coordinates   5819562..5820086 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain DVT427     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5814562..5825086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB742_RS26850 (HB742_26870) aroB 5815678..5816784 (-) 1107 WP_003116138.1 3-dehydroquinate synthase -
  HB742_RS26855 (HB742_26875) aroK 5816834..5817352 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HB742_RS26860 (HB742_26880) pilQ 5817364..5819508 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  HB742_RS26865 (HB742_26885) comL/pilP 5819562..5820086 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HB742_RS26870 (HB742_26890) pilO 5820083..5820706 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB742_RS26875 (HB742_26895) pilN 5820703..5821299 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HB742_RS26880 (HB742_26900) pilM 5821299..5822363 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HB742_RS26885 (HB742_26905) - 5822548..5825019 (+) 2472 WP_033877381.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=378402 HB742_RS26865 WP_003095836.1 5819562..5820086(-) (comL/pilP) [Pseudomonas aeruginosa strain DVT427]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=378402 HB742_RS26865 WP_003095836.1 5819562..5820086(-) (comL/pilP) [Pseudomonas aeruginosa strain DVT427]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment