Detailed information NTG0378341

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB742_RS06925
• Genome accession: NZ_CP050324
• Coordinates: 1477571..1478575 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT427
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1472571..1483575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB742_RS06895 (HB742_06900)	fghA	1472663..1473514 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HB742_RS06900 (HB742_06905)	ispF	1473585..1474058 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB742_RS06905 (HB742_06910)	truD	1474055..1475122 (+)	1068	WP_003143260.1	tRNA pseudouridine(13) synthase TruD	-
HB742_RS06910 (HB742_06915)	surE	1475110..1475859 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB742_RS06915 (HB742_06920)	-	1475892..1476527 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB742_RS06920 (HB742_06925)	-	1476573..1477466 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB742_RS06925 (HB742_06930)	rpoS	1477571..1478575 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB742_RS06930 (HB742_06935)	fdxA	1479002..1479325 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HB742_RS06935 (HB742_06940)	mutS	1479392..1481959 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HB742_RS06940 (HB742_06945)	-	1482085..1483092 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=378341 HB742_RS06925 WP_003113871.1 1477571..1478575(+) (rpoS) [Pseudomonas aeruginosa strain DVT427]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=378341 HB742_RS06925 WP_003113871.1 1477571..1478575(+) (rpoS) [Pseudomonas aeruginosa strain DVT427]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653