Detailed information NTG0378310

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB744_RS27185
• Genome accession: NZ_CP050323
• Coordinates: 5759788..5760792 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT429
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5754788..5765792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB744_RS27170 (HB744_27260)	-	5755271..5756278 (+)	1008	WP_023102904.1	TolB family protein	-
HB744_RS27175 (HB744_27265)	mutS	5756404..5758971 (+)	2568	WP_023102903.1	DNA mismatch repair protein MutS	-
HB744_RS27180 (HB744_27270)	fdxA	5759038..5759361 (+)	324	WP_003092272.1	ferredoxin FdxA	-
HB744_RS27185 (HB744_27275)	rpoS	5759788..5760792 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB744_RS27190 (HB744_27280)	-	5760897..5761790 (-)	894	WP_121412621.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB744_RS27195 (HB744_27285)	-	5761836..5762471 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB744_RS27200 (HB744_27290)	surE	5762504..5763253 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB744_RS27205 (HB744_27295)	truD	5763241..5764308 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
HB744_RS27210 (HB744_27300)	ispF	5764305..5764778 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB744_RS27215 (HB744_27305)	fghA	5764849..5765700 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=378310 HB744_RS27185 WP_003113871.1 5759788..5760792(-) (rpoS) [Pseudomonas aeruginosa strain DVT429]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=378310 HB744_RS27185 WP_003113871.1 5759788..5760792(-) (rpoS) [Pseudomonas aeruginosa strain DVT429]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653