Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HB744_RS09520 Genome accession   NZ_CP050323
Coordinates   2020014..2021456 (+) Length   480 a.a.
NCBI ID   WP_023121716.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT429     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015014..2026456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB744_RS09500 (HB744_09530) - 2015682..2017253 (-) 1572 WP_003161496.1 DUF4129 domain-containing protein -
  HB744_RS09505 (HB744_09535) - 2017240..2018220 (-) 981 WP_003093893.1 stage II sporulation protein M -
  HB744_RS09510 (HB744_09540) - 2018217..2019014 (-) 798 WP_003123273.1 RDD family protein -
  HB744_RS09515 (HB744_09545) - 2019052..2019789 (-) 738 WP_003101171.1 hypothetical protein -
  HB744_RS09520 (HB744_09550) sbcB 2020014..2021456 (+) 1443 WP_023121716.1 exodeoxyribonuclease I Machinery gene
  HB744_RS09525 (HB744_09555) mvaT 2021541..2021915 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  HB744_RS09530 (HB744_09560) purU 2022175..2023026 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  HB744_RS09535 (HB744_09565) - 2023077..2023289 (+) 213 WP_003101176.1 hypothetical protein -
  HB744_RS09540 (HB744_09570) - 2023264..2024265 (-) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HB744_RS09545 (HB744_09575) - 2024262..2025023 (-) 762 WP_016562308.1 DUF2334 domain-containing protein -
  HB744_RS09550 (HB744_09580) - 2025016..2026131 (-) 1116 WP_003101181.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55463.73 Da        Isoelectric Point: 5.5542

>NTDB_id=378263 HB744_RS09520 WP_023121716.1 2020014..2021456(+) (sbcB) [Pseudomonas aeruginosa strain DVT429]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVAL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=378263 HB744_RS09520 WP_023121716.1 2020014..2021456(+) (sbcB) [Pseudomonas aeruginosa strain DVT429]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTACGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGCCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGTCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44