Detailed information NTG0037824

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HSERO_RS20715
• Genome accession: NC_014323
• Coordinates: 4747592..4748782 (+)
• Length: 396 a.a.
• NCBI ID: WP_081441928.1
• Uniprot ID: -
• Organism: Herbaspirillum seropedicae SmR1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4742592..4753782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSERO_RS20690 (Hsero_4141)	coaD	4742787..4743269 (-)	483	WP_006461533.1	pantetheine-phosphate adenylyltransferase	-
HSERO_RS20695 (Hsero_4142)	rsmD	4743306..4743980 (-)	675	WP_013236069.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HSERO_RS20700 (Hsero_4143)	-	4744027..4745343 (-)	1317	WP_013236070.1	M16 family metallopeptidase	-
HSERO_RS20705 (Hsero_4144)	-	4745369..4746028 (-)	660	WP_013236071.1	ParA family protein	-
HSERO_RS20710 (Hsero_4145)	-	4746046..4747425 (-)	1380	WP_013236072.1	M16 family metallopeptidase	-
HSERO_RS20715 (Hsero_4146)	pilA	4747592..4748782 (+)	1191	WP_081441928.1	signal recognition particle-docking protein FtsY	Machinery gene
HSERO_RS20720 (Hsero_4147)	-	4748787..4749479 (+)	693	WP_013236074.1	cell division ATP-binding protein FtsE	-
HSERO_RS20725 (Hsero_4148)	ftsX	4749476..4750399 (+)	924	WP_013236075.1	permease-like cell division protein FtsX	-
HSERO_RS20730 (Hsero_4149)	-	4750421..4751524 (-)	1104	WP_232284875.1	Abi family protein	-
HSERO_RS20735 (Hsero_4150)	rpoH	4751945..4752844 (+)	900	WP_013236077.1	RNA polymerase sigma factor RpoH	-
HSERO_RS20740 (Hsero_4151)	-	4752953..4753543 (-)	591	WP_013236078.1	SCO family protein	-

Sequence

Protein

• Length: 396 a.a.
• Molecular weight: 41435.85 Da
• Isoelectric Point: 6.1772

>NTDB_id=37824 HSERO_RS20715 WP_081441928.1 4747592..4748782(+) (pilA) [Herbaspirillum seropedicae SmR1]
MFSFFKRKPKPEAQPALPPQSEPAPPAAPQPAAPAAPAPAAAAPAVTPPAAPVAPVAPTPAAPVAPVAPVAAVEPVAEVT
EQAEEAEIVPAPAPAPEAKRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLVSDAGVEATQWLLDELKKKVK
AERLTEAAQVRTALRTLLIELLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAR
EQLAVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLV
IDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEFVDALLS

Nucleotide

• Length: 1191 bp

>NTDB_id=37824 HSERO_RS20715 WP_081441928.1 4747592..4748782(+) (pilA) [Herbaspirillum seropedicae SmR1]
ATGTTCAGTTTCTTCAAGAGAAAACCCAAACCGGAAGCGCAGCCAGCGCTGCCGCCCCAATCCGAACCGGCGCCGCCAGC
CGCGCCCCAACCTGCCGCCCCGGCGGCGCCGGCCCCTGCTGCTGCCGCACCGGCGGTGACGCCTCCGGCGGCGCCTGTCG
CGCCTGTTGCTCCTACGCCTGCTGCTCCGGTTGCCCCGGTTGCCCCGGTCGCCGCCGTCGAGCCTGTGGCCGAGGTGACC
GAACAAGCCGAGGAAGCCGAGATCGTCCCCGCCCCGGCCCCGGCGCCCGAAGCCAAGCGTTCCTGGCTGTCGCGCCTGAA
GGCGGGCCTGTCCAAGACCTCCAGCAACCTGACCACGCTCTTCGTCGGCGCGCGCATCGACGAGGATCTCTACGAAGAGC
TGGAATCGGCCCTGCTGGTCTCCGACGCCGGCGTCGAGGCCACCCAGTGGCTGCTGGACGAACTGAAGAAGAAGGTCAAG
GCTGAACGCCTGACCGAAGCCGCCCAGGTGCGCACGGCCCTGCGCACCCTGCTCATCGAACTGCTGCAGCCGCTGCAGCG
TCCGCTGGTGCTGGGCCGCGACAAACCGCTGGTGATGATGATCGCCGGCGTCAACGGCGCCGGCAAGACCACCACCATCG
GCAAGCTGGCGCTGCATCTGCAGGCGCATGGCCAGTCGGTGCTGCTGGCCGCAGGCGACACCTTCCGCGCCGCCGCCCGC
GAACAGTTGGCGGTCTGGGGCGAACGCAACAATGTCCAGGTGATTGCCCAGGAGTCCGGTGACCCGGCTGCGGTGGCCTA
TGACTCGGTGCATTCGGCGCAGGCGCGCGGCACCCATGTGGTGATGGTCGATACCGCCGGCCGTCTGCCTACGCAATTGC
ACCTGATGGATGAACTCAAGAAGATCAAACGGGTCATTGGCAAGGCGATGCACTCAGCGCCCCACGAAGTGCTGCTGGTC
ATCGACGGCAACACCGGCCAGAATGCCCTGGCCCAGGTGAAGGCCTTCGATGATGCGCTGGGACTGACCGGCCTGGTGGT
GACCAAGCTGGACGGCACGGCCAAGGGCGGCATCCTGGCCGCCATCGCCAAGACCCGTCCGGTGCCGCTGTACTTCATCG
GCGTGGGTGAACAGATCGAAGACCTGCAGGCCTTCAACGCCACCGAATTCGTCGACGCCCTCCTGAGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (116-175)

• SRP54-type protein, GTPase domain (SRP54) (197-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.064	100	0.545