Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FR815_RS11495 Genome accession   NZ_CP042517
Coordinates   2317842..2318456 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain E33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2312842..2323456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR815_RS11480 (FR815_11485) helD 2313066..2315120 (-) 2055 WP_102191186.1 DNA helicase IV -
  FR815_RS11485 (FR815_11490) - 2315246..2315692 (+) 447 WP_003035892.1 YccF domain-containing protein -
  FR815_RS11490 (FR815_11495) yccS 2315711..2317864 (+) 2154 WP_032939270.1 YccS family putative transporter -
  FR815_RS11495 (FR815_11500) sxy/tfoX 2317842..2318456 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  FR815_RS11500 (FR815_11505) sulA 2318673..2319182 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  FR815_RS11505 (FR815_11510) ompA 2319540..2320586 (+) 1047 WP_003035883.1 porin OmpA -
  FR815_RS11510 (FR815_11515) matP 2320676..2321128 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  FR815_RS11515 (FR815_11520) - 2321314..2323074 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=378225 FR815_RS11495 WP_003035889.1 2317842..2318456(-) (sxy/tfoX) [Citrobacter freundii strain E33]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=378225 FR815_RS11495 WP_003035889.1 2317842..2318456(-) (sxy/tfoX) [Citrobacter freundii strain E33]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment