Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HB747_RS18975 Genome accession   NZ_CP050322
Coordinates   4130741..4131337 (-) Length   198 a.a.
NCBI ID   WP_174707459.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT729     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4125741..4136337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB747_RS30640 - 4126135..4126284 (-) 150 Protein_3758 hypothetical protein -
  HB747_RS18955 (HB747_18990) - 4126377..4127960 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  HB747_RS18960 (HB747_18995) - 4127957..4128844 (+) 888 WP_003103932.1 SDR family oxidoreductase -
  HB747_RS18965 (HB747_19000) - 4128918..4129457 (+) 540 WP_174707458.1 CbrC family protein -
  HB747_RS18970 (HB747_19005) - 4129470..4130618 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  HB747_RS18975 (HB747_19010) recR 4130741..4131337 (-) 597 WP_174707459.1 recombination mediator RecR Machinery gene
  HB747_RS18980 (HB747_19015) - 4131416..4131742 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  HB747_RS18985 (HB747_19020) dnaX 4131788..4133875 (-) 2088 WP_058173746.1 DNA polymerase III subunit gamma/tau -
  HB747_RS18990 (HB747_19025) - 4133912..4134778 (+) 867 WP_003122917.1 ABC transporter substrate-binding protein -
  HB747_RS19000 (HB747_19035) - 4135032..4135409 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21147.39 Da        Isoelectric Point: 6.0063

>NTDB_id=378165 HB747_RS18975 WP_174707459.1 4130741..4131337(-) (recR) [Pseudomonas aeruginosa strain DVT729]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGAEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=378165 HB747_RS18975 WP_174707459.1 4130741..4131337(-) (recR) [Pseudomonas aeruginosa strain DVT729]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TTGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGTGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGGCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.739

100

0.48
  recR Bacillus subtilis subsp. subtilis str. 168

47.959

98.99

0.475