Detailed information NTG0378131

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB747_RS07195
• Genome accession: NZ_CP050322
• Coordinates: 1584035..1585039 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DVT729
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1579035..1590039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB747_RS07165 (HB747_07160)	fghA	1579126..1579977 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HB747_RS07170 (HB747_07165)	ispF	1580048..1580521 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB747_RS07175 (HB747_07170)	truD	1580518..1581585 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
HB747_RS07180 (HB747_07175)	surE	1581573..1582322 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HB747_RS07185 (HB747_07180)	-	1582355..1582990 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB747_RS07190 (HB747_07185)	-	1583036..1583930 (+)	895	Protein_1421	peptidoglycan DD-metalloendopeptidase family protein	-
HB747_RS07195 (HB747_07190)	rpoS	1584035..1585039 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HB747_RS07200 (HB747_07195)	fdxA	1585465..1585788 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HB747_RS07205 (HB747_07200)	mutS	1585855..1588421 (-)	2567	Protein_1424	DNA mismatch repair protein MutS	-
HB747_RS07210 (HB747_07205)	-	1588547..1589554 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=378131 HB747_RS07195 WP_003113871.1 1584035..1585039(+) (rpoS) [Pseudomonas aeruginosa strain DVT729]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=378131 HB747_RS07195 WP_003113871.1 1584035..1585039(+) (rpoS) [Pseudomonas aeruginosa strain DVT729]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653