Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HBL79_RS08145 Genome accession   NZ_CP050316
Coordinates   1697518..1698024 (-) Length   168 a.a.
NCBI ID   WP_035685396.1    Uniprot ID   A0A0F5EQV1
Organism   Avibacterium paragallinarum strain ESV-135     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692518..1703024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBL79_RS08120 (HBL79_08120) - 1693459..1693599 (-) 141 WP_156127777.1 hypothetical protein -
  HBL79_RS08125 (HBL79_08125) - 1693630..1694943 (+) 1314 WP_017805051.1 NCS2 family permease -
  HBL79_RS08130 (HBL79_08130) comE1/comEA 1695206..1695562 (+) 357 WP_035685388.1 ComEA family DNA-binding protein Machinery gene
  HBL79_RS08135 (HBL79_08135) rdgB 1695700..1696296 (+) 597 WP_035685390.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  HBL79_RS08140 (HBL79_08140) hemW 1696296..1697450 (+) 1155 WP_035685394.1 radical SAM family heme chaperone HemW -
  HBL79_RS08145 (HBL79_08145) luxS 1697518..1698024 (-) 507 WP_035685396.1 S-ribosylhomocysteine lyase Regulator
  HBL79_RS08150 (HBL79_08150) - 1698247..1698705 (-) 459 WP_035685398.1 YqaA family protein -
  HBL79_RS08155 (HBL79_08155) - 1698698..1699306 (-) 609 WP_035685399.1 sugar O-acetyltransferase -
  HBL79_RS08160 (HBL79_08160) - 1699307..1699908 (-) 602 Protein_1593 beta-phosphoglucomutase family hydrolase -
  HBL79_RS08165 (HBL79_08165) - 1700051..1700428 (+) 378 WP_017805060.1 hypothetical protein -
  HBL79_RS08170 (HBL79_08170) ispF 1700561..1701037 (+) 477 WP_035685404.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HBL79_RS08175 (HBL79_08175) truD 1701041..1702048 (+) 1008 WP_035685407.1 tRNA pseudouridine(13) synthase TruD -
  HBL79_RS08180 (HBL79_08180) surE 1702057..1702797 (+) 741 WP_035685409.1 5'/3'-nucleotidase SurE -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19094.95 Da        Isoelectric Point: 5.5568

>NTDB_id=378091 HBL79_RS08145 WP_035685396.1 1697518..1698024(-) (luxS) [Avibacterium paragallinarum strain ESV-135]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=378091 HBL79_RS08145 WP_035685396.1 1697518..1698024(-) (luxS) [Avibacterium paragallinarum strain ESV-135]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGGTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACAGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EQV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

98.81

0.726