Detailed information NTG0378078

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: HBL79_RS05380
• Genome accession: NZ_CP050316
• Coordinates: 1108271..1109692 (-)
• Length: 473 a.a.
• NCBI ID: WP_035684621.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain ESV-135
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1103271..1114692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBL79_RS05350 (HBL79_05350)	rpsI	1103558..1103950 (+)	393	WP_017806615.1	30S ribosomal protein S9	-
HBL79_RS05355 (HBL79_05355)	sspA	1104235..1104873 (+)	639	WP_035684630.1	stringent starvation protein SspA	-
HBL79_RS05360 (HBL79_05360)	-	1104877..1105347 (+)	471	WP_035684628.1	ClpXP protease specificity-enhancing factor	-
HBL79_RS05365 (HBL79_05365)	-	1105497..1106150 (+)	654	WP_035684625.1	IS1595 family transposase	-
HBL79_RS05370 (HBL79_05370)	-	1106811..1107293 (+)	483	WP_081637494.1	DUF2726 domain-containing protein	-
HBL79_RS05380 (HBL79_05380)	sbcB	1108271..1109692 (-)	1422	WP_035684621.1	exodeoxyribonuclease I	Machinery gene
HBL79_RS05385 (HBL79_05385)	-	1109697..1110572 (-)	876	WP_035684619.1	DMT family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 55031.55 Da
• Isoelectric Point: 5.9984

>NTDB_id=378078 HBL79_RS05380 WP_035684621.1 1108271..1109692(-) (sbcB) [Avibacterium paragallinarum strain ESV-135]
MKDDFSFFIYDYESFGINPATDRPAQFAGIRTDKDFNIIGEPVMFYCKQTNDYLPSPSAVMVTGITPQECNEKGLSEPEF
AQRILQEFSVPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWVYDDARMPSF
RLENLTKANGIEHSNAHDAMADVYATIEMAKLIKQKQPRLFQFFFEHRDKKSLEAMIDTATMTPLVHVSGMLGNYRGNTT
WIAPLAWHPTNKNAVIVCDLDSNIEDLLSKSAVELQQHLYTKKSELEQQGILPVPLKLVHINKCPILAPAKTLLPENAQR
LGIDRQRCLDNLAKLRANTEIRDKVLQIFTDERVFESSDNVETELYSGFFGINDKNNMAILRDLPPEKLSEHNLTFQDKR
VEALLFHYRARHFYKTLSRAEQVRWDKYRRNKLEKSAVQFEQELQNLVEENQNHPEKLALLQQIYEYGVKLLG

Nucleotide

• Length: 1422 bp

>NTDB_id=378078 HBL79_RS05380 WP_035684621.1 1108271..1109692(-) (sbcB) [Avibacterium paragallinarum strain ESV-135]
ATGAAAGATGATTTCAGCTTTTTTATTTATGATTACGAAAGTTTCGGCATCAATCCCGCGACGGATCGCCCCGCACAGTT
TGCGGGCATTCGTACCGATAAAGATTTCAACATTATTGGCGAGCCTGTGATGTTTTATTGCAAGCAAACCAATGATTATT
TGCCCTCGCCCAGTGCGGTGATGGTAACGGGAATTACGCCGCAAGAATGCAATGAAAAAGGCTTATCCGAACCCGAATTT
GCTCAACGCATTTTGCAAGAATTTTCCGTGCCGAACACCTGCGTAATGGGGTTTAATAATATTCGTTACGATGACGAAAT
GACCCGCTATACTTTTTACCGCAACTTTATTGATCCCTATGAATATAGCTGGAAAAACGGCAATTCTCGCTGGGATCTAT
TGGATTTGGTGCGGGCTTGTTATGCTTTGCGTCCTGAGGGAATAAATTGGGTTTATGATGACGCAAGAATGCCTTCATTC
CGCTTGGAAAATCTCACCAAAGCCAATGGAATAGAGCATAGCAATGCACACGATGCAATGGCTGATGTGTATGCCACCAT
TGAAATGGCGAAGCTGATTAAGCAAAAACAACCGAGATTGTTCCAGTTTTTCTTTGAGCATCGCGATAAAAAATCCCTTG
AAGCAATGATTGATACGGCGACGATGACCCCCTTAGTTCACGTTTCAGGAATGTTGGGAAATTATCGCGGCAATACCACT
TGGATCGCCCCGCTTGCGTGGCACCCAACCAATAAAAATGCGGTGATTGTGTGTGATTTGGATAGCAATATCGAGGATTT
ACTGAGTAAAAGTGCGGTCGAATTACAGCAACATTTATACACGAAAAAATCCGAACTCGAACAGCAAGGGATTTTACCTG
TTCCGTTAAAATTGGTGCATATTAATAAATGCCCAATTCTTGCCCCCGCGAAAACCTTATTACCTGAAAATGCTCAGCGT
TTAGGCATTGATCGCCAGCGTTGTTTGGATAATCTCGCGAAATTGCGTGCAAATACGGAAATTCGCGATAAAGTGCTACA
AATTTTTACTGACGAGCGGGTATTTGAGTCAAGTGATAATGTGGAAACGGAATTATACAGTGGCTTTTTTGGCATTAATG
ATAAAAACAATATGGCGATTTTGCGTGATTTACCGCCTGAAAAACTCTCAGAACACAATCTAACATTCCAAGATAAGCGG
GTAGAGGCGTTGTTATTCCATTACCGTGCGCGACATTTTTATAAAACTTTGAGCAGAGCAGAGCAGGTGCGATGGGATAA
ATACCGCCGTAACAAGTTAGAAAAAAGTGCGGTGCAATTTGAGCAAGAATTACAAAACCTTGTGGAAGAAAACCAAAATC
ACCCTGAAAAATTGGCATTGTTGCAGCAAATTTATGAATATGGAGTGAAGTTATTAGGCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-468)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.009	98.52	0.552