Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FK178_RS11545 Genome accession   NZ_CP042476
Coordinates   2556196..2557560 (+) Length   454 a.a.
NCBI ID   WP_146835181.1    Uniprot ID   A0A5B8YQQ0
Organism   Antarcticibacterium arcticum strain PAMC 28998     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2551196..2562560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK178_RS11520 (FK178_11520) - 2551890..2552702 (-) 813 WP_146835166.1 glycogen/starch synthase -
  FK178_RS11525 (FK178_11525) panC 2552805..2553656 (+) 852 WP_146835169.1 pantoate--beta-alanine ligase -
  FK178_RS11530 (FK178_11530) panD 2553666..2554016 (+) 351 WP_146835172.1 aspartate 1-decarboxylase -
  FK178_RS11535 (FK178_11535) - 2554020..2554985 (+) 966 WP_146835175.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FK178_RS11540 (FK178_11540) - 2555022..2556170 (+) 1149 WP_146835178.1 alpha/beta hydrolase -
  FK178_RS11545 (FK178_11545) radA 2556196..2557560 (+) 1365 WP_146835181.1 DNA repair protein RadA Machinery gene
  FK178_RS11550 (FK178_11550) - 2557606..2558742 (+) 1137 WP_146835184.1 M23 family metallopeptidase -
  FK178_RS11555 (FK178_11555) - 2558750..2559784 (-) 1035 WP_146835187.1 NADP(H)-dependent aldo-keto reductase -
  FK178_RS11560 (FK178_11560) - 2559905..2560861 (-) 957 WP_146835190.1 OmpA family protein -
  FK178_RS11565 (FK178_11565) - 2560884..2561648 (-) 765 WP_146835193.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50201.66 Da        Isoelectric Point: 6.8941

>NTDB_id=378075 FK178_RS11545 WP_146835181.1 2556196..2557560(+) (radA) [Antarcticibacterium arcticum strain PAMC 28998]
MAKTKTTFYCQNCGAQHSKWQGQCSSCKEWNTLVEEIVQKPDQKDWKPKETREVKRTPVPLRITEIEVGNEPRLTTNNTE
LDRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLHLSQKTLYVSGEESQQQIKMRAERINPNPANCFILTETKTQNIFRQ
IESLQPEIVIIDSIQTLHTDYIESSPGSISQIRECTAELIKYAKETGVPVILIGHITKEGSIAGPKVLEHMVDTVLQFEG
DRNHVYRILRAHKNRFGSTQELGIYEMQGSGLREVSNPSEILISKNDEGLSGTAIASTLEGMRPLMIEIQALVSSAVYGT
PQRSTTGYNAKRLNMLLAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVIAAILSSNEDIYIEKDICFAAEVGLAGE
IRPVTRAEQRILEAEKLGFATIMVSKQTKLPKTHYAIRIQKVARIEDVVTYLFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=378075 FK178_RS11545 WP_146835181.1 2556196..2557560(+) (radA) [Antarcticibacterium arcticum strain PAMC 28998]
ATGGCCAAGACCAAAACTACTTTTTATTGTCAAAATTGCGGGGCACAACATTCTAAATGGCAGGGACAGTGCAGCTCCTG
TAAGGAATGGAACACCCTTGTAGAGGAAATAGTCCAGAAACCCGACCAAAAAGACTGGAAACCAAAGGAAACCAGGGAAG
TGAAACGCACCCCGGTGCCCTTAAGAATTACAGAAATTGAGGTGGGAAATGAGCCAAGGCTCACTACAAATAATACAGAG
TTGGACCGGGTCCTGGGTGGGGGCCTGGTACCGGGCTCACTTACGCTACTTGGAGGAGAGCCCGGGATAGGTAAGAGTAC
CCTGTTACTCCAGATCTCCCTGCACCTTTCTCAAAAAACCCTGTACGTCTCTGGTGAGGAAAGCCAGCAACAAATTAAAA
TGCGGGCAGAACGTATTAATCCCAATCCCGCCAACTGTTTCATTTTAACTGAAACAAAGACACAGAATATCTTCAGGCAA
ATTGAAAGCCTGCAGCCTGAAATAGTTATTATAGATTCCATCCAAACCCTGCATACAGACTATATCGAGAGCTCTCCCGG
AAGCATCTCTCAAATACGGGAATGTACAGCAGAGCTTATTAAATATGCAAAGGAAACCGGTGTGCCGGTAATTCTTATTG
GGCATATTACCAAAGAAGGCAGTATCGCAGGACCAAAAGTTCTGGAGCATATGGTGGACACTGTTTTGCAGTTTGAAGGA
GACCGGAACCATGTATACAGGATACTGAGGGCACATAAGAACCGGTTTGGGTCTACACAGGAACTTGGAATTTACGAAAT
GCAGGGAAGCGGCCTAAGGGAAGTCTCAAATCCTTCAGAAATTTTGATCTCCAAAAATGATGAAGGCCTTAGTGGTACGG
CCATAGCTTCTACTCTTGAAGGTATGCGCCCGTTAATGATTGAGATTCAGGCTTTGGTAAGTTCGGCTGTATATGGCACT
CCCCAACGCTCTACCACGGGGTATAATGCCAAACGGCTAAACATGCTGCTCGCGGTTCTCGAAAAACGGGCCGGGTTCAG
GCTGGGAGCCAAAGATGTTTTTCTCAATGTAACGGGAGGTATCTCGGTTGATGATCCTGCAATAGATCTCGCGGTTATCG
CGGCTATTTTATCTTCCAATGAAGATATTTATATTGAAAAGGACATTTGCTTTGCTGCAGAGGTTGGCCTTGCGGGAGAA
ATAAGGCCGGTGACACGCGCAGAACAACGCATTTTGGAGGCCGAAAAACTCGGATTTGCAACTATTATGGTTTCAAAACA
AACCAAATTACCAAAGACCCATTATGCTATTCGAATTCAAAAGGTAGCGAGAATAGAGGACGTGGTGACCTATTTATTTG
GCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)

AAA domain (AAA_25)

(75-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8YQQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.802

100

0.493
  radA Streptococcus pneumoniae Rx1

48.802

100

0.493
  radA Streptococcus pneumoniae D39

48.802

100

0.493
  radA Streptococcus pneumoniae TIGR4

48.802

100

0.493
  radA Streptococcus mitis NCTC 12261

48.584

100

0.491
  radA Streptococcus mitis SK321

48.684

100

0.489
  radA Bacillus subtilis subsp. subtilis str. 168

51.402

94.273

0.485

Multiple sequence alignment