Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FRZ06_RS19850 Genome accession   NZ_CP042469
Coordinates   4461351..4462730 (+) Length   459 a.a.
NCBI ID   WP_419822460.1    Uniprot ID   -
Organism   Anoxybacterium hadale strain MT110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4456351..4467730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRZ06_RS19830 (FRZ06_19535) - 4456376..4456810 (+) 435 WP_419822456.1 nucleoside recognition domain-containing protein -
  FRZ06_RS19835 (FRZ06_19540) - 4456807..4457265 (+) 459 WP_419822457.1 nucleoside recognition domain-containing protein -
  FRZ06_RS19840 (FRZ06_19545) - 4457406..4459343 (+) 1938 WP_419822458.1 elongation factor G -
  FRZ06_RS19845 (FRZ06_19550) hcp 4459682..4461310 (+) 1629 WP_419822459.1 hydroxylamine reductase -
  FRZ06_RS19850 (FRZ06_19555) radA 4461351..4462730 (+) 1380 WP_419822460.1 DNA repair protein RadA Machinery gene
  FRZ06_RS19855 (FRZ06_19560) - 4462855..4463217 (-) 363 WP_419822461.1 hypothetical protein -
  FRZ06_RS19860 (FRZ06_19565) - 4463332..4464354 (+) 1023 WP_419822462.1 GNAT family N-acetyltransferase -
  FRZ06_RS19865 (FRZ06_19570) - 4464447..4465205 (-) 759 WP_419822463.1 nitroreductase family protein -
  FRZ06_RS19870 - 4465392..4465538 (+) 147 WP_419822464.1 CPC_1213 family protein -
  FRZ06_RS19875 (FRZ06_19575) - 4465532..4466152 (+) 621 WP_419822465.1 HDIG domain-containing metalloprotein -
  FRZ06_RS19880 (FRZ06_19580) - 4466274..4467128 (+) 855 WP_419822466.1 lytic transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49785.45 Da        Isoelectric Point: 6.6368

>NTDB_id=378065 FRZ06_RS19850 WP_419822460.1 4461351..4462730(+) (radA) [Anoxybacterium hadale strain MT110]
MSKKSKTVFICQECGYESPKWQGQCICGQWNTMVEEKVVEIREDDKRHRGASGEKLKANRLSDIKSGSETRIDTGIGELN
RVLGGGLVVGSLTLISGEPGIGKSTIIIQAASKIAERCGKVLYVTGEESAEQVKMRADRVCKGSLDDLFLLSETNMEHIV
KIAEELNPAFLIIDSIQTMYTDALESAPGSVSQVRACGNELMRIGKGKKIPIFIVAHVTKSGDLAGPKIIEHLVDCVLNF
TGERDQDLRILRAYKNRFGTTSEIGAFEMAEEGLTEIHNLSECFLEGMEEGTEGAVATALYEGTRPLLLEVQALTSPTNI
GFARRTAIGVELSRLNMILAVLERKANLSLINQDVYVNIVGGMRPEGTSIDLAVALAIYSSCKRMKGLNRVLAIGEIGLT
GDLRSIRNADKIVREAARLGFRTVIMPQKNAAKLAEMPGGLKVVGVNSLNEAIQTASQT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=378065 FRZ06_RS19850 WP_419822460.1 4461351..4462730(+) (radA) [Anoxybacterium hadale strain MT110]
ATGAGCAAAAAATCAAAAACGGTTTTCATTTGTCAGGAGTGCGGGTATGAGAGTCCCAAATGGCAAGGCCAGTGCATCTG
CGGCCAATGGAATACCATGGTGGAAGAAAAAGTTGTTGAAATAAGAGAAGATGATAAGCGTCACCGGGGTGCTTCTGGAG
AGAAATTAAAGGCAAACAGACTTTCTGACATCAAATCGGGAAGCGAGACAAGGATTGATACCGGCATCGGGGAACTGAAT
CGTGTTTTGGGAGGCGGCCTTGTGGTTGGCTCCCTGACGTTGATTTCCGGTGAGCCGGGTATCGGCAAATCCACCATAAT
TATACAAGCAGCGTCGAAGATAGCAGAACGCTGCGGAAAAGTACTTTATGTGACGGGAGAAGAATCGGCGGAACAGGTGA
AAATGCGTGCGGACAGAGTTTGCAAGGGCAGCCTTGATGACTTATTTCTGCTTTCGGAAACAAACATGGAACATATCGTC
AAAATTGCTGAGGAGCTGAATCCGGCCTTTTTAATCATAGATTCCATCCAGACCATGTATACTGATGCACTGGAATCGGC
ACCGGGCAGTGTTTCTCAGGTCAGGGCCTGCGGAAATGAGCTCATGAGAATCGGCAAGGGAAAGAAAATACCGATCTTTA
TCGTGGCGCATGTTACAAAGAGCGGAGATCTTGCAGGTCCGAAGATCATTGAGCATTTGGTAGACTGCGTGCTTAACTTC
ACAGGAGAGAGGGATCAGGATCTGAGAATCTTAAGAGCATACAAAAATCGATTCGGAACCACAAGCGAAATCGGTGCTTT
TGAGATGGCGGAGGAGGGACTGACCGAGATTCATAATCTCTCCGAGTGCTTCCTGGAAGGCATGGAGGAGGGAACAGAAG
GAGCGGTGGCAACGGCACTATATGAAGGAACCCGCCCACTGCTTTTAGAGGTTCAGGCGCTGACCTCTCCGACGAATATT
GGTTTCGCACGGAGAACTGCTATCGGTGTGGAACTCTCCAGACTGAATATGATTCTGGCTGTTCTGGAACGAAAGGCTAA
CCTTTCGCTGATTAACCAAGACGTTTATGTCAATATCGTAGGAGGCATGAGGCCGGAAGGCACCTCTATTGATCTGGCGG
TTGCTTTAGCAATCTATTCCTCCTGTAAAAGGATGAAAGGATTAAATCGGGTTCTTGCAATCGGAGAAATTGGACTCACC
GGGGATCTTAGATCCATTCGGAATGCAGATAAGATCGTGAGAGAGGCAGCTCGGCTCGGCTTTAGAACGGTCATTATGCC
GCAAAAAAATGCCGCCAAGCTTGCAGAAATGCCCGGCGGCCTTAAGGTGGTGGGGGTGAACAGCCTGAACGAAGCAATCC
AGACCGCTTCGCAAACCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)

AAA domain (AAA_25)

(63-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.127

99.782

0.49
  radA Streptococcus pneumoniae Rx1

46.711

99.346

0.464
  radA Streptococcus pneumoniae D39

46.711

99.346

0.464
  radA Streptococcus pneumoniae R6

46.711

99.346

0.464
  radA Streptococcus pneumoniae TIGR4

46.711

99.346

0.464
  radA Streptococcus mitis NCTC 12261

46.711

99.346

0.464
  radA Streptococcus mitis SK321

46.711

99.346

0.464

Multiple sequence alignment