Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HB750_RS09185 Genome accession   NZ_CP050273
Coordinates   1885219..1885974 (-) Length   251 a.a.
NCBI ID   WP_002269787.1    Uniprot ID   -
Organism   Streptococcus mutans strain P1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1880219..1890974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB750_RS09165 (HB750_09165) purC 1882128..1882835 (-) 708 WP_002269789.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  HB750_RS09170 (HB750_09170) comA 1882957..1883535 (-) 579 WP_019804608.1 ATP-binding cassette domain-containing protein Regulator
  HB750_RS09175 (HB750_09175) - 1883763..1884011 (-) 249 WP_019804607.1 acyl carrier protein -
  HB750_RS09180 (HB750_09180) plsX 1884013..1885011 (-) 999 WP_002269788.1 phosphate acyltransferase PlsX -
  HB750_RS09185 (HB750_09185) recO 1885219..1885974 (-) 756 WP_002269787.1 DNA repair protein RecO Machinery gene
  HB750_RS09190 (HB750_09190) - 1885964..1887139 (-) 1176 WP_002264118.1 pyridoxal phosphate-dependent aminotransferase -
  HB750_RS09195 (HB750_09195) - 1887228..1888196 (-) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  HB750_RS09200 (HB750_09200) gbpB 1888312..1889604 (-) 1293 WP_019804606.1 glucan-binding protein GbpB -
  HB750_RS09205 (HB750_09205) mreD 1889714..1890220 (-) 507 WP_002263141.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29384.89 Da        Isoelectric Point: 6.6577

>NTDB_id=378042 HB750_RS09185 WP_002269787.1 1885219..1885974(-) (recO) [Streptococcus mutans strain P1]
MQTKETRGLVLYNRQFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=378042 HB750_RS09185 WP_002269787.1 1885219..1885974(-) (recO) [Streptococcus mutans strain P1]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCAATTTAGAGAAGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATTTTGACCAATA
TTTTTGAAATCCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653

Multiple sequence alignment