Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LEGAS_RS07240 Genome accession   NC_014319
Coordinates   1511402..1513189 (-) Length   595 a.a.
NCBI ID   WP_010383008.1    Uniprot ID   A0A9Q3XUF3
Organism   Leuconostoc gasicomitatum LMG 18811     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506402..1518189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEGAS_RS07210 (LEGAS_1449) - 1506497..1506880 (-) 384 WP_013231838.1 VOC family protein -
  LEGAS_RS07215 (LEGAS_1450) - 1506943..1507677 (-) 735 WP_013231839.1 hypothetical protein -
  LEGAS_RS07220 (LEGAS_1451) - 1507682..1508698 (-) 1017 WP_010015354.1 zinc-dependent alcohol dehydrogenase family protein -
  LEGAS_RS07225 (LEGAS_1452) - 1508892..1509860 (+) 969 WP_010383002.1 LacI family DNA-binding transcriptional regulator -
  LEGAS_RS07230 (LEGAS_1453) - 1509930..1510847 (-) 918 WP_010383004.1 phosphoglycerate dehydrogenase -
  LEGAS_RS07235 (LEGAS_1454) - 1510893..1511288 (-) 396 WP_013231840.1 cytidine deaminase -
  LEGAS_RS07240 (LEGAS_1455) pepF 1511402..1513189 (-) 1788 WP_010383008.1 oligoendopeptidase F Regulator
  LEGAS_RS07245 (LEGAS_1456) - 1513286..1514314 (-) 1029 WP_013231841.1 competence protein CoiA family protein -
  LEGAS_RS07250 (LEGAS_1457) - 1514364..1515797 (-) 1434 WP_013231842.1 ABC transporter permease subunit -
  LEGAS_RS07255 (LEGAS_1458) - 1515875..1516627 (-) 753 WP_041771847.1 amino acid ABC transporter ATP-binding protein -
  LEGAS_RS07260 (LEGAS_1459) - 1516627..1518075 (-) 1449 WP_013231844.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67633.39 Da        Isoelectric Point: 4.4813

>NTDB_id=37804 LEGAS_RS07240 WP_010383008.1 1511402..1513189(-) (pepF) [Leuconostoc gasicomitatum LMG 18811]
MAQLLRNEVPEDLTWDLSTIFDSDNDWELAFAAVKQEAEMLSRFVGHVGDSAALLQSALEADLKIERELEKVYVYAHQIY
DQDTTNQSYAAFNSRVQALWAEVSQATAYFQPEVLNIPDDKLTAYLMTDGLQQYAHLFETLRALKPHTLDAEQEKLLAGV
GDIFNASENTFGALDNSDITFGDVHTESGETVALTNGLFSLLLESKSRDLRREAFETLYDSYIGLQNTFASTLSSHIKGH
NFLAKVRHYNSAREAAILPHNVPTTVFDTLSQTVTANLPLLHRFVSLRKRILGVTDVHSYDLYVPLVDEVDFDVTYEKAQ
EIVLAALAPLGQDYLEIVKKAFDERWIDVVENKGKRSGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRH
NQDYHYGDYPIFLAEIASTTNESLLTNYLLKTNSDPKFQAYVLNQYLDGFKGTVFRQTQFAEFENWIHEQSAAGVALTAD
QMSTYYSELNQKYYGPDLFPDEEIAYEWTRIPHFYYNYYVYQYATGEAAATTLAERIIKNDGAEDYKAYLKAGSSDYPLN
VILKAGVDMSQADYLKQAFDVFETRLNQLESLLIK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=37804 LEGAS_RS07240 WP_010383008.1 1511402..1513189(-) (pepF) [Leuconostoc gasicomitatum LMG 18811]
ATGGCACAACTATTACGCAATGAAGTACCTGAAGATCTTACGTGGGATCTGTCTACAATTTTTGATTCTGATAATGATTG
GGAACTCGCTTTTGCTGCTGTTAAACAGGAAGCGGAAATGTTGAGTCGTTTTGTTGGACATGTTGGCGATTCAGCTGCAT
TGTTACAGTCTGCTTTAGAGGCAGATTTGAAAATAGAACGGGAATTGGAAAAAGTGTATGTATATGCACATCAAATTTAT
GATCAAGACACAACAAATCAGTCGTATGCGGCTTTCAATTCACGCGTACAAGCACTTTGGGCTGAAGTAAGTCAAGCAAC
AGCCTATTTTCAACCAGAAGTTTTAAACATACCAGATGATAAATTGACAGCTTACTTAATGACTGATGGTTTACAACAGT
ATGCACATTTATTTGAAACATTGCGTGCTTTAAAGCCACACACGTTAGATGCGGAACAAGAAAAATTATTAGCTGGTGTA
GGTGATATTTTTAATGCATCAGAGAACACATTTGGTGCGCTTGATAATTCAGATATAACTTTTGGGGATGTACATACGGA
ATCTGGTGAGACTGTAGCCTTGACCAATGGGCTATTTAGTTTGTTACTGGAATCAAAGTCACGAGATTTACGCCGTGAAG
CATTTGAAACATTATATGACAGTTACATCGGTTTGCAAAACACATTTGCTTCAACTTTATCATCTCACATTAAAGGACAT
AACTTTTTAGCTAAAGTGCGACATTATAATTCAGCGCGCGAAGCAGCTATCTTGCCACACAACGTCCCAACGACTGTTTT
TGATACGCTAAGTCAGACGGTAACGGCTAATTTACCATTGTTACATCGCTTTGTATCATTGCGTAAAAGAATTTTAGGCG
TAACAGATGTGCATAGTTATGATTTGTATGTGCCATTGGTGGATGAAGTTGATTTTGATGTTACATATGAAAAGGCACAA
GAAATTGTGTTAGCTGCGTTAGCACCATTAGGTCAAGATTATCTTGAAATTGTCAAAAAAGCATTTGACGAACGCTGGAT
TGATGTTGTTGAAAACAAAGGGAAACGTTCAGGAGCATATTCGAGTGGTACTTATGATACAAATCCTTTTATTTTGTTAA
ACTGGCAAAATAATTTGAACAATGTTTATACATTGGCTCATGAAATGGGTCATTCTGTTCATTCTTATTTAACACGACAT
AATCAGGACTATCATTATGGTGACTATCCAATTTTCTTAGCAGAAATTGCTTCGACAACTAATGAAAGTTTACTAACAAA
TTATTTACTAAAAACAAATAGTGATCCTAAATTCCAAGCGTATGTTTTGAATCAATATCTTGATGGTTTTAAAGGGACTG
TCTTTCGTCAGACGCAGTTTGCGGAATTTGAAAATTGGATTCATGAGCAAAGTGCAGCGGGTGTCGCTTTGACTGCTGAC
CAAATGAGCACATATTATAGTGAACTTAACCAAAAATATTATGGACCAGATTTGTTTCCAGATGAAGAAATTGCATATGA
ATGGACACGAATACCACATTTTTATTATAATTACTATGTTTACCAATACGCAACAGGTGAAGCGGCAGCAACCACATTAG
CAGAACGTATCATTAAAAATGATGGCGCAGAAGATTATAAGGCATACTTAAAAGCTGGTTCATCGGACTATCCGTTGAAT
GTGATTTTGAAAGCTGGCGTGGATATGAGTCAAGCAGATTATTTAAAGCAGGCATTCGATGTGTTTGAGACACGATTGAA
TCAATTGGAATCATTATTAATCAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(202-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.614

99.664

0.524

Multiple sequence alignment