Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FRD01_RS04900 Genome accession   NZ_CP042467
Coordinates   1147936..1149324 (-) Length   462 a.a.
NCBI ID   WP_146958159.1    Uniprot ID   -
Organism   Microvenator marinus strain V1718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142936..1154324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD01_RS04875 (FRD01_04875) - 1144318..1144953 (+) 636 WP_146958150.1 cytochrome c oxidase subunit 3 -
  FRD01_RS04880 (FRD01_04880) - 1144965..1145273 (+) 309 WP_146958151.1 cytochrome C oxidase subunit IV family protein -
  FRD01_RS04885 (FRD01_04885) - 1145413..1146474 (+) 1062 WP_146958153.1 heme o synthase -
  FRD01_RS04890 (FRD01_04890) - 1146477..1147070 (+) 594 WP_146958155.1 cytochrome c oxidase assembly protein -
  FRD01_RS24605 - 1147067..1147195 (+) 129 WP_283808708.1 hypothetical protein -
  FRD01_RS04895 (FRD01_04895) - 1147200..1147934 (+) 735 WP_146958157.1 SURF1 family protein -
  FRD01_RS04900 (FRD01_04900) radA 1147936..1149324 (-) 1389 WP_146958159.1 DNA repair protein RadA Machinery gene
  FRD01_RS04905 (FRD01_04905) - 1149337..1151421 (-) 2085 WP_146958160.1 OmpA family protein -
  FRD01_RS04910 (FRD01_04910) - 1151485..1151898 (-) 414 WP_146958162.1 DUF2752 domain-containing protein -
  FRD01_RS04915 (FRD01_04915) - 1151900..1152271 (-) 372 WP_249756022.1 DUF4234 domain-containing protein -
  FRD01_RS04920 (FRD01_04920) - 1152375..1154120 (-) 1746 WP_146958165.1 ABC transporter transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49250.87 Da        Isoelectric Point: 6.6189

>NTDB_id=378028 FRD01_RS04900 WP_146958159.1 1147936..1149324(-) (radA) [Microvenator marinus strain V1718]
MAKIKTMHVCQECGHESPRWLGRCPSCLQWNTMVEEVREPEGPPSVASARSGYGAAAGGEPIRLGDIEMLAEERVKSDIA
ELDMVLGGGFVPGGIVMLGGDPGIGKSTLSLQVAGHFASKGLEVLYISGEESLTQIRLRANRLGVDSKALWVVGETSVER
VEKLLSEKRPALAVIDSIQTLQSESLTSAPGSVAQLREVTSRLTQIGKGFSIPIVLVGHVTKEGAIAGPKVLEHMVDTVL
YFESQNAGAFRLLRAVKNRFGSTNEVGIFEMRGDGLHEVGNPSAAFLEGRPTDAPGSVVVPILEGTRPLMVEVQALVSPT
NYGPPRVTAVGVDTNRVILLLNILEKRTGAKVAGMDVFINVAGGLKLMEPAADLAIAMAILSSFYERAVPSDLAIFGELG
LTGEVRAVAQAARRVAETRKLGFKRVLGPKANIQEVKDELKESALLGAQHVAEARRLLFGDR

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=378028 FRD01_RS04900 WP_146958159.1 1147936..1149324(-) (radA) [Microvenator marinus strain V1718]
GTGGCCAAGATAAAGACGATGCACGTCTGCCAGGAGTGCGGACATGAGAGTCCGCGATGGCTTGGGCGTTGTCCCTCGTG
TTTGCAGTGGAACACGATGGTCGAAGAGGTTCGCGAGCCTGAGGGCCCGCCGTCTGTGGCGTCCGCCCGTTCTGGCTACG
GGGCTGCGGCGGGGGGCGAGCCAATTCGCCTTGGTGACATCGAGATGCTCGCCGAGGAGCGAGTGAAGTCCGATATCGCA
GAGCTCGACATGGTTCTCGGTGGAGGGTTTGTGCCGGGTGGTATCGTGATGTTGGGCGGTGATCCCGGGATTGGCAAATC
CACGCTCTCACTTCAAGTGGCAGGTCATTTTGCTTCCAAGGGGCTCGAAGTTCTCTACATTTCGGGCGAAGAGAGTCTGA
CCCAGATTCGTCTTCGAGCGAACCGTCTGGGTGTGGATTCAAAGGCACTTTGGGTTGTGGGCGAAACGAGTGTAGAGCGA
GTCGAGAAGTTGCTTTCCGAGAAGCGGCCAGCGCTTGCCGTGATCGACTCTATTCAGACCTTGCAAAGTGAGTCGCTAAC
CTCGGCGCCTGGCTCCGTTGCTCAACTCCGAGAGGTGACAAGTCGACTCACTCAGATTGGAAAAGGTTTTTCCATTCCAA
TCGTGTTGGTGGGCCATGTGACCAAGGAAGGCGCAATCGCCGGGCCGAAAGTTCTTGAGCATATGGTGGACACGGTCCTC
TATTTCGAGTCTCAGAATGCCGGTGCGTTTCGATTACTTCGCGCCGTGAAGAACCGGTTTGGGTCCACCAACGAAGTGGG
TATTTTTGAGATGCGCGGAGACGGCCTACATGAAGTTGGAAACCCATCTGCGGCGTTCTTGGAGGGCAGGCCTACCGACG
CTCCCGGAAGCGTCGTGGTGCCCATTCTGGAGGGCACTCGACCGTTGATGGTGGAGGTGCAGGCGCTCGTGTCACCCACA
AACTACGGGCCCCCTCGGGTCACTGCAGTGGGTGTAGATACCAATCGCGTGATCTTGCTCCTGAACATTCTTGAGAAAAG
GACGGGCGCTAAGGTTGCGGGAATGGACGTCTTCATCAATGTCGCCGGTGGTTTGAAGCTCATGGAGCCTGCCGCTGACT
TAGCGATTGCGATGGCAATTCTCTCGTCATTCTACGAGCGAGCGGTTCCGTCCGACCTGGCGATTTTTGGAGAGTTGGGA
CTGACAGGCGAGGTGCGAGCGGTGGCTCAAGCGGCTCGGCGTGTGGCCGAGACGAGAAAGCTCGGGTTTAAACGCGTTCT
CGGTCCGAAAGCCAATATCCAGGAGGTGAAGGATGAGCTCAAGGAATCGGCGCTTCTCGGCGCGCAGCATGTAGCCGAGG
CAAGGCGTCTGCTCTTCGGCGACCGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.844

99.784

0.517
  radA Streptococcus mitis NCTC 12261

47.059

99.351

0.468
  radA Streptococcus pneumoniae Rx1

47.059

99.351

0.468
  radA Streptococcus pneumoniae D39

47.059

99.351

0.468
  radA Streptococcus pneumoniae R6

47.059

99.351

0.468
  radA Streptococcus pneumoniae TIGR4

47.059

99.351

0.468
  radA Streptococcus mitis SK321

46.841

99.351

0.465

Multiple sequence alignment