Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   FR741_RS17645 Genome accession   NZ_CP042452
Coordinates   482092..483189 (+) Length   365 a.a.
NCBI ID   WP_005397733.1    Uniprot ID   A0AA92R960
Organism   Vibrio diabolicus strain FA3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 477092..488189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS17620 (FR741_18280) - 478420..479757 (-) 1338 WP_167427331.1 MATE family efflux transporter -
  FR741_RS17625 (FR741_18285) - 479879..480193 (-) 315 WP_005373603.1 DUF496 family protein -
  FR741_RS17630 (FR741_18290) - 480435..480638 (+) 204 WP_031780656.1 hypothetical protein -
  FR741_RS17635 (FR741_18295) - 480804..481454 (+) 651 WP_047008119.1 YceH family protein -
  FR741_RS17640 (FR741_18300) - 481451..481771 (+) 321 WP_012842363.1 GIY-YIG nuclease family protein -
  FR741_RS17645 (FR741_18310) luxP 482092..483189 (+) 1098 WP_005397733.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  FR741_RS17650 (FR741_18315) luxQ 483189..485765 (+) 2577 WP_167427332.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  FR741_RS17655 (FR741_18320) - 486067..486522 (+) 456 WP_005397727.1 MarR family transcriptional regulator -
  FR741_RS17660 (FR741_18325) - 486558..487616 (+) 1059 WP_104972361.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41598.94 Da        Isoelectric Point: 4.9826

>NTDB_id=378013 FR741_RS17645 WP_005397733.1 482092..483189(+) (luxP) [Vibrio diabolicus strain FA3]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGREDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=378013 FR741_RS17645 WP_005397733.1 482092..483189(+) (luxP) [Vibrio diabolicus strain FA3]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAACGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCCGTTCCGGTTGAAAGAGACAAAAAGCGTCCGTTAAAAATTTCTGTGGTTTATCCAGGTCAACAGATTTCGGAT
TATTGGATTCGAAATATAGACGCATTTGAACAGCGTTTAGATAAACTTGATATCGACTATCAACTTAATCAAGTTTTTAC
CCGTCCCAACGCAGATATTAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTGATTTTCA
CTCTCGATACCACTAGGCATCGTAAGTTTGTTGAACACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAAAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGCCGTGAGCT
TGCTGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTACTTTTCAGAAGGGTATATCAGCGATA
TCAGAGGCAATACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTACTATACCAAAGCGACA
AAGCAGTCTGGGTATGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTGGCGCTAGGGGCTGTTGATGCGCTGAAAGAATTAGGGCGTGAAGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACCCGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCGGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment