Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FR741_RS09015 Genome accession   NZ_CP042451
Coordinates   1872144..1873565 (+) Length   473 a.a.
NCBI ID   WP_167426672.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FA3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1867144..1878565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS08995 (FR741_09335) - 1867627..1868433 (-) 807 WP_167426670.1 adenosylcobinamide-GDP ribazoletransferase -
  FR741_RS09000 (FR741_09340) cobT 1868433..1869476 (-) 1044 WP_167426671.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FR741_RS09005 (FR741_09345) - 1869724..1870413 (+) 690 WP_005397784.1 NAD(P)H-binding protein -
  FR741_RS09010 (FR741_09350) - 1870614..1871987 (+) 1374 WP_109168439.1 L-cystine transporter -
  FR741_RS09015 (FR741_09355) sbcB 1872144..1873565 (+) 1422 WP_167426672.1 exodeoxyribonuclease I Machinery gene
  FR741_RS09020 (FR741_09360) - 1873621..1873995 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  FR741_RS09025 (FR741_09365) - 1873997..1874674 (+) 678 WP_005377888.1 LrgB family protein -
  FR741_RS09030 (FR741_09370) cdd 1875118..1876005 (+) 888 WP_005397788.1 cytidine deaminase -
  FR741_RS09035 (FR741_09375) purT 1876151..1877326 (+) 1176 WP_167426673.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FR741_RS09040 (FR741_09380) - 1877399..1878049 (-) 651 WP_104969334.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54402.61 Da        Isoelectric Point: 4.8658

>NTDB_id=377998 FR741_RS09015 WP_167426672.1 1872144..1873565(+) (sbcB) [Vibrio diabolicus strain FA3]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=377998 FR741_RS09015 WP_167426672.1 1872144..1873565(+) (sbcB) [Vibrio diabolicus strain FA3]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACAAACCCCGCGAAAGATCGCCCAAG
CCAGTTCGCTGGTGTCCGCACAGATGAAAACTTCAATATCATCGGCGAACCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGCTGGG
ATTTACTCGATGTGCTACGCGCATGCCACGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGGTTGC
GACTATCGAAATGGCGAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGTA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCTTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTAGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAGTTGGTTCATTTAAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment