Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FR741_RS05165 Genome accession   NZ_CP042451
Coordinates   1091861..1093267 (+) Length   468 a.a.
NCBI ID   WP_167426368.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FA3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086861..1098267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS05145 (FR741_05375) rsxB 1087392..1087988 (-) 597 WP_005396655.1 electron transport complex subunit RsxB -
  FR741_RS05150 (FR741_05380) rsxA 1087992..1088570 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  FR741_RS05160 (FR741_05390) uvrB 1089534..1091564 (+) 2031 WP_167426367.1 excinuclease ABC subunit UvrB -
  FR741_RS05165 (FR741_05395) luxO 1091861..1093267 (+) 1407 WP_167426368.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FR741_RS05170 (FR741_05400) luxU 1093264..1093608 (+) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  FR741_RS05175 (FR741_05405) - 1093720..1094616 (-) 897 WP_006742807.1 YvcK family protein -
  FR741_RS05180 (FR741_05410) moaA 1094915..1095904 (+) 990 WP_085342816.1 GTP 3',8-cyclase MoaA -
  FR741_RS05185 (FR741_05415) moaB 1096010..1096522 (+) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  FR741_RS05190 (FR741_05420) moaC 1096551..1097030 (+) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  FR741_RS05195 (FR741_05425) moaD 1097027..1097284 (+) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  FR741_RS05200 (FR741_05430) moaE 1097286..1097741 (+) 456 WP_048625774.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52101.66 Da        Isoelectric Point: 6.2533

>NTDB_id=377996 FR741_RS05165 WP_167426368.1 1091861..1093267(+) (luxO) [Vibrio diabolicus strain FA3]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHSVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGCMSHEEGKNFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=377996 FR741_RS05165 WP_167426368.1 1091861..1093267(+) (luxO) [Vibrio diabolicus strain FA3]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTTTGCCAGATATGACGGGGATGGACGTTTTACACTCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACTGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGTTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCTGACCGCTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGCTAAAAA
ACGAGGCTGATAACCCGGGAAATCAAAGTTATCAAGGCTTTATTGGCAGTAGTCAAACAATGCAACAGGTTTACCGCACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGTGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAATTGTGTGAGATGGATTTAGATTTGCAAACCAAATTGCTACGATTTATTCAAACCGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCGCCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATACTCACTGTTAGGCTGTATGTCGCACGAGGAAGGAAAAAACTTCGTGCGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCAGGCAACGTTCGTCAGTTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.86

95.94

0.833

Multiple sequence alignment