Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FR741_RS03060 Genome accession   NZ_CP042451
Coordinates   620827..621345 (+) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio diabolicus strain FA3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 615827..626345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS03050 (FR741_03195) gshA 618544..620112 (+) 1569 WP_167426246.1 glutamate--cysteine ligase -
  FR741_RS03055 (FR741_03200) - 620137..620742 (+) 606 WP_170891673.1 hypothetical protein -
  FR741_RS03060 (FR741_03205) luxS 620827..621345 (+) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  FR741_RS03065 (FR741_03210) - 621460..622728 (-) 1269 WP_005396696.1 HlyC/CorC family transporter -
  FR741_RS03070 (FR741_03215) - 622853..623647 (-) 795 WP_167426247.1 inner membrane protein YpjD -
  FR741_RS03075 (FR741_03220) ffh 623872..625254 (+) 1383 WP_005385423.1 signal recognition particle protein -
  FR741_RS03080 (FR741_03225) rpsP 625464..625712 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  FR741_RS03085 (FR741_03230) rimM 625742..626290 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=377989 FR741_RS03060 WP_005396698.1 620827..621345(+) (luxS) [Vibrio diabolicus strain FA3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=377989 FR741_RS03060 WP_005396698.1 620827..621345(+) (luxS) [Vibrio diabolicus strain FA3]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATTC
ATACACTAGAGCACCTTTATGCAGGCTTTATGCGCAATCATCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACGGGCTTTTACATGAGCCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGCACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAGATCGCAAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment