Detailed information NTG0377986

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FR741_RS02930
• Genome accession: NZ_CP042451
• Coordinates: 598188..599174 (+)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio diabolicus strain FA3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 593188..604174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FR741_RS02895 (FR741_03035)	ftsB	593197..593478 (+)	282	WP_005380907.1	cell division protein FtsB	-
FR741_RS02900 (FR741_03040)	ispD	593480..594184 (+)	705	WP_065646112.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FR741_RS02905 (FR741_03045)	ispF	594202..594678 (+)	477	WP_005393886.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FR741_RS02910 (FR741_03050)	truD	594725..595768 (+)	1044	WP_046875093.1	tRNA pseudouridine(13) synthase TruD	-
FR741_RS02915 (FR741_03055)	surE	595768..596544 (+)	777	WP_005393882.1	5'/3'-nucleotidase SurE	-
FR741_RS02920 (FR741_03060)	-	596544..597170 (+)	627	WP_167426239.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FR741_RS02925 (FR741_03065)	-	597184..598107 (+)	924	WP_167426240.1	peptidoglycan DD-metalloendopeptidase family protein	-
FR741_RS02930 (FR741_03070)	rpoS	598188..599174 (+)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
FR741_RS02935 (FR741_03075)	mutS	599255..601816 (-)	2562	WP_167426241.1	DNA mismatch repair protein MutS	-
FR741_RS02940 (FR741_03080)	pncC	601901..602383 (+)	483	WP_104974807.1	nicotinamide-nucleotide amidase	-
FR741_RS02945 (FR741_03085)	recA	602584..603627 (+)	1044	WP_005393872.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=377986 FR741_RS02930 WP_005393877.1 598188..599174(+) (rpoS) [Vibrio diabolicus strain FA3]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=377986 FR741_RS02930 WP_005393877.1 598188..599174(+) (rpoS) [Vibrio diabolicus strain FA3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATTTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCCCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATACAGTAATCG
AGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCTGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAGAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGCGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAAGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851