Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FR729_RS08720 Genome accession   NZ_CP042449
Coordinates   1851991..1853397 (-) Length   468 a.a.
NCBI ID   WP_005380768.1    Uniprot ID   A0AAW9BFV3
Organism   Vibrio alginolyticus strain FA2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1846991..1858397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR729_RS08685 (FR729_08940) moaE 1847496..1847951 (-) 456 WP_167415363.1 molybdopterin synthase catalytic subunit MoaE -
  FR729_RS08690 (FR729_08945) moaD 1847953..1848210 (-) 258 WP_017636051.1 molybdopterin synthase sulfur carrier subunit -
  FR729_RS08695 (FR729_08950) moaC 1848207..1848686 (-) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  FR729_RS08700 (FR729_08955) moaB 1848713..1849225 (-) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  FR729_RS08705 (FR729_08960) moaA 1849327..1850316 (-) 990 WP_165439101.1 GTP 3',8-cyclase MoaA -
  FR729_RS08710 (FR729_08965) - 1850615..1851511 (+) 897 WP_025767209.1 YvcK family protein -
  FR729_RS08715 (FR729_08970) luxU 1851650..1851994 (-) 345 WP_136976695.1 quorum-sensing phosphorelay protein LuxU -
  FR729_RS08720 (FR729_08975) luxO 1851991..1853397 (-) 1407 WP_005380768.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FR729_RS08725 (FR729_08980) uvrB 1853688..1855718 (-) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52094.70 Da        Isoelectric Point: 6.2547

>NTDB_id=377934 FR729_RS08720 WP_005380768.1 1851991..1853397(-) (luxO) [Vibrio alginolyticus strain FA2]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=377934 FR729_RS08720 WP_005380768.1 1851991..1853397(-) (luxO) [Vibrio alginolyticus strain FA2]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATCTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTTTAATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCCATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGTAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATCACAGGTGAAAGTGGTACTGGTAAAGAGGTATGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGGGCAGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGATATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829

Multiple sequence alignment