Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FR729_RS05435 Genome accession   NZ_CP042449
Coordinates   1223268..1224794 (-) Length   508 a.a.
NCBI ID   WP_167415200.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FA2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218268..1229794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR729_RS05415 (FR729_05570) - 1218287..1219717 (-) 1431 WP_167415199.1 lipopolysaccharide biosynthesis protein -
  FR729_RS05420 (FR729_05575) - 1219710..1220882 (-) 1173 WP_005377641.1 glycosyltransferase -
  FR729_RS05425 (FR729_05580) - 1220894..1222078 (-) 1185 WP_005387237.1 glycosyltransferase -
  FR729_RS05430 (FR729_05585) - 1222223..1223293 (-) 1071 WP_017820658.1 glycosyltransferase family 4 protein -
  FR729_RS05435 (FR729_05590) luxO 1223268..1224794 (-) 1527 WP_167415200.1 sigma-54-dependent transcriptional regulator Regulator
  FR729_RS05440 (FR729_05595) - 1225103..1225483 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  FR729_RS05445 (FR729_05600) - 1225495..1226181 (-) 687 WP_086046754.1 AAA family ATPase -
  FR729_RS05450 (FR729_05605) - 1226181..1228283 (-) 2103 WP_017820662.1 SLBB domain-containing protein -
  FR729_RS05455 (FR729_05610) - 1228280..1229146 (-) 867 WP_005389575.1 OmpA family protein -
  FR729_RS05460 (FR729_05615) - 1229173..1229493 (-) 321 WP_005389573.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56589.44 Da        Isoelectric Point: 5.9083

>NTDB_id=377932 FR729_RS05435 WP_167415200.1 1223268..1224794(-) (luxO) [Vibrio alginolyticus strain FA2]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITSPPVYTEEPSPSAVEPSITAAEQPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=377932 FR729_RS05435 WP_167415200.1 1223268..1224794(-) (luxO) [Vibrio alginolyticus strain FA2]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTATGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACTCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACATCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCAGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484

Multiple sequence alignment