Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FR729_RS04515 Genome accession   NZ_CP042449
Coordinates   1003802..1005223 (-) Length   473 a.a.
NCBI ID   WP_167415153.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FA2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 998802..1010223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR729_RS04490 (FR729_04640) - 999334..999984 (+) 651 WP_021707633.1 thiopurine S-methyltransferase -
  FR729_RS04495 (FR729_04645) purT 1000057..1001232 (-) 1176 WP_021033842.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FR729_RS04500 (FR729_04650) cdd 1001376..1002263 (-) 888 WP_005377892.1 cytidine deaminase -
  FR729_RS04505 (FR729_04655) - 1002693..1003370 (-) 678 WP_005385454.1 LrgB family protein -
  FR729_RS04510 (FR729_04660) - 1003372..1003746 (-) 375 WP_167415152.1 CidA/LrgA family protein -
  FR729_RS04515 (FR729_04665) sbcB 1003802..1005223 (-) 1422 WP_167415153.1 exodeoxyribonuclease I Machinery gene
  FR729_RS04520 (FR729_04670) - 1005381..1006754 (-) 1374 WP_005377885.1 L-cystine transporter -
  FR729_RS04525 (FR729_04675) - 1006955..1007644 (-) 690 WP_167415154.1 NAD(P)H-binding protein -
  FR729_RS04530 (FR729_04680) cobT 1007893..1008936 (+) 1044 WP_005377883.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FR729_RS04535 (FR729_04685) - 1008966..1009742 (+) 777 WP_167415679.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54416.59 Da        Isoelectric Point: 4.8633

>NTDB_id=377931 FR729_RS04515 WP_167415153.1 1003802..1005223(-) (sbcB) [Vibrio alginolyticus strain FA2]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=377931 FR729_RS04515 WP_167415153.1 1003802..1005223(-) (sbcB) [Vibrio alginolyticus strain FA2]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGCAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGGTTCTTTTCTCCAGCCG
ATCGCGCAGCTATGGATATCATTCGCGAAACCGATCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment