Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FSB76_RS15940 Genome accession   NZ_CP042437
Coordinates   3790559..3792028 (-) Length   489 a.a.
NCBI ID   WP_147054982.1    Uniprot ID   A0A5B8W2Z3
Organism   Mucilaginibacter ginsenosidivorax strain KHI28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3785559..3797028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSB76_RS15920 (FSB76_15920) - 3787073..3787747 (+) 675 WP_147054974.1 hypothetical protein -
  FSB76_RS15925 (FSB76_15925) - 3787858..3788343 (+) 486 WP_147054976.1 hypothetical protein -
  FSB76_RS15930 (FSB76_15930) - 3788364..3788828 (-) 465 WP_147054978.1 DUF4920 domain-containing protein -
  FSB76_RS15935 (FSB76_15935) - 3789085..3790461 (+) 1377 WP_147054980.1 NHL repeat-containing protein -
  FSB76_RS15940 (FSB76_15940) radA 3790559..3792028 (-) 1470 WP_147054982.1 DNA repair protein RadA Machinery gene
  FSB76_RS15945 (FSB76_15945) - 3792526..3792969 (+) 444 WP_147054984.1 DUF1569 domain-containing protein -
  FSB76_RS15950 (FSB76_15950) - 3793235..3794242 (-) 1008 WP_147054986.1 hypothetical protein -
  FSB76_RS15955 (FSB76_15955) - 3794331..3794546 (-) 216 WP_147054988.1 DUF2442 domain-containing protein -
  FSB76_RS15960 (FSB76_15960) - 3794655..3795380 (-) 726 WP_090651649.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 53754.70 Da        Isoelectric Point: 6.2551

>NTDB_id=377903 FSB76_RS15940 WP_147054982.1 3790559..3792028(-) (radA) [Mucilaginibacter ginsenosidivorax strain KHI28]
MAKTKIAYFCQSCGFESPKWLGKCPSCQQWNTFVEEIIEKGNASNAVPTWKVTSNTQQRANKPVQVADITFNEEDRVLTP
DKEFNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLALNMPKLKVLYVSGEESERQIKMRAERLAPDGGNAKNQILNSKSE
IEHPKSEIGGSCYVLCETSTQNIFKQIEALEPDLVVIDSIQTLHSSHIESTPGSVSQVRECTAEMLRFAKETSTPVFLIG
HITKDGAIAGPKILEHMVDTVLQFEGDRHHVYRILRTIKNRFGSASELGIYEMMGEGLREVSNPSEILLSHRDEPLSGIT
ISATLEGMRPMLIETQALVSASAYGTPQRTATGFDTKRMSMLLAVLEKRCGFRLAAKDVFLNITGGIRVEDPAIDLGLAA
AIISSHEDMPIPFKTCFAGEIGLSGEIRAVNRVEQRIAEAQKLGFNQIFISKYNLPSGGQDKKRMDLSRYDIDIKIVSSI
EEVFGQLFG

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=377903 FSB76_RS15940 WP_147054982.1 3790559..3792028(-) (radA) [Mucilaginibacter ginsenosidivorax strain KHI28]
ATGGCCAAAACTAAAATTGCCTATTTCTGCCAAAGCTGCGGCTTCGAATCGCCCAAATGGTTGGGCAAATGCCCATCGTG
CCAGCAATGGAATACTTTTGTAGAAGAAATTATAGAAAAGGGCAACGCCAGCAATGCTGTACCCACCTGGAAGGTAACAT
CCAATACCCAGCAACGCGCCAACAAGCCCGTGCAGGTAGCAGATATTACTTTTAACGAAGAAGACAGGGTACTTACGCCG
GATAAGGAATTTAACCGTGTTTTGGGGGGTGGTATAGTAGCTGGTTCGCTGGTGCTTATTGGCGGAGAGCCTGGTATAGG
TAAATCAACCCTAATGCTGCAACTGGCGCTAAATATGCCGAAACTGAAGGTGCTTTATGTATCGGGCGAGGAAAGTGAAA
GGCAGATTAAGATGAGAGCGGAAAGATTAGCCCCCGACGGGGGAAATGCTAAAAATCAAATTCTGAATTCTAAATCCGAA
ATCGAACATCCGAAATCCGAAATCGGAGGCTCCTGCTATGTACTTTGCGAAACATCTACCCAAAACATATTTAAGCAAAT
AGAGGCGCTGGAGCCCGATTTGGTGGTGATAGATTCTATCCAAACCCTGCATTCATCGCACATTGAATCCACCCCGGGGA
GCGTATCGCAGGTACGGGAGTGTACCGCCGAAATGCTGCGCTTTGCCAAAGAAACCTCGACCCCGGTATTCCTGATAGGG
CATATTACCAAAGACGGCGCAATTGCCGGCCCTAAAATACTGGAACACATGGTTGATACAGTGCTGCAATTTGAAGGCGA
CAGGCACCATGTTTACCGCATCCTGCGCACGATAAAAAACCGTTTTGGCTCGGCATCTGAGTTGGGCATTTACGAAATGA
TGGGCGAAGGGCTGCGGGAAGTATCCAACCCTTCCGAGATCCTGCTATCGCACCGCGACGAACCGCTGAGCGGCATCACC
ATATCGGCCACTTTAGAGGGCATGAGGCCCATGCTGATAGAAACCCAGGCATTGGTAAGCGCATCAGCCTACGGTACCCC
GCAACGTACGGCGACGGGCTTTGATACCAAACGGATGAGCATGCTGCTGGCTGTACTGGAAAAACGCTGTGGCTTCAGGC
TTGCGGCTAAAGATGTGTTCCTGAATATTACGGGCGGTATCAGGGTAGAAGATCCGGCTATCGATCTGGGCCTGGCTGCG
GCCATTATATCGTCTCATGAAGATATGCCTATCCCCTTTAAAACCTGTTTTGCCGGCGAAATTGGCCTGTCGGGTGAGAT
AAGGGCCGTTAACCGTGTAGAGCAACGCATTGCCGAGGCACAAAAACTGGGCTTTAACCAGATATTTATCTCTAAGTATA
ACCTCCCATCCGGCGGACAGGATAAAAAGCGCATGGACCTATCCCGCTACGATATCGATATTAAAATAGTAAGCAGCATC
GAAGAGGTATTTGGGCAATTGTTTGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-246)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(367-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8W2Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.079

93.456

0.487
  radA Streptococcus mitis NCTC 12261

47.035

100

0.47
  radA Streptococcus pneumoniae Rx1

47.035

100

0.47
  radA Streptococcus pneumoniae D39

47.035

100

0.47
  radA Streptococcus pneumoniae R6

47.035

100

0.47
  radA Streptococcus pneumoniae TIGR4

47.035

100

0.47
  radA Streptococcus mitis SK321

46.83

100

0.468

Multiple sequence alignment