Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FRZ54_RS02555 Genome accession   NZ_CP042436
Coordinates   541710..543176 (+) Length   488 a.a.
NCBI ID   WP_147030086.1    Uniprot ID   A0A5B8URB6
Organism   Mucilaginibacter ginsenosidivorans strain Gsoil 3017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 536710..548176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRZ54_RS02530 (FRZ54_02530) mutY 536971..538023 (-) 1053 WP_147030081.1 A/G-specific adenine glycosylase -
  FRZ54_RS02535 (FRZ54_02535) - 538197..538493 (+) 297 WP_147030082.1 HU family DNA-binding protein -
  FRZ54_RS02540 (FRZ54_02540) - 538504..539388 (+) 885 WP_147030083.1 M48 family metallopeptidase -
  FRZ54_RS02545 (FRZ54_02545) - 539607..541157 (+) 1551 WP_147030084.1 Rne/Rng family ribonuclease -
  FRZ54_RS02550 (FRZ54_02550) - 541402..541596 (-) 195 WP_147030085.1 hypothetical protein -
  FRZ54_RS02555 (FRZ54_02555) radA 541710..543176 (+) 1467 WP_147030086.1 DNA repair protein RadA Machinery gene
  FRZ54_RS02560 (FRZ54_02560) - 543193..544587 (-) 1395 WP_147030087.1 hypothetical protein -
  FRZ54_RS02565 (FRZ54_02565) - 544807..545259 (+) 453 WP_147030088.1 DUF4920 domain-containing protein -
  FRZ54_RS02570 (FRZ54_02570) - 545274..545924 (-) 651 WP_147030089.1 hypothetical protein -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 53959.80 Da        Isoelectric Point: 5.4289

>NTDB_id=377894 FRZ54_RS02555 WP_147030086.1 541710..543176(+) (radA) [Mucilaginibacter ginsenosidivorans strain Gsoil 3017]
MAKTKVAYFCQSCGFESPKWLGKCPSCQHWNTFAEEIIEKENKSIPNWKTPSTSMQRANKPIQVSDISFDEDQRILTPDN
EFNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLALNMPSMKVLYVSGEESERQIKMRAERLVQSEVRSRKSEVDNVKSEI
ENSKFEIGSECYILTETSTQNIFKQIEQLEPDMVVIDSIQTLYSSHIESTPGSVSQVRECTAELLRFAKESGTPVFLIGH
ITKDGMIAGPKILEHMVDTVLQFEGDRHHVYRILRAVKNRFGSASELGIYEMLGEGLREVSNPSEILLSQRDEPLSGITI
SATLEGMRPMLIETQALVSTSAYGTPQRTATGFDTKRMNMLLAVLEKRCGFKLGGKDVFLNITGGISVEDPAIDLGLAAA
IISSHEDIPIPFKTCFAGEIGLSGEVRAVNRIEQRIAEAQKLGFEQIFISKYNLESGGQNKKRIDLTRYNIAVKTVGSIE
EVFSALFG

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=377894 FRZ54_RS02555 WP_147030086.1 541710..543176(+) (radA) [Mucilaginibacter ginsenosidivorans strain Gsoil 3017]
TTGGCCAAAACTAAAGTTGCTTATTTCTGCCAGAGCTGTGGCTTCGAATCGCCTAAATGGCTGGGTAAATGCCCGTCGTG
CCAGCACTGGAACACCTTTGCCGAAGAAATAATTGAGAAGGAAAACAAATCCATCCCCAATTGGAAAACACCTTCCACTT
CCATGCAGCGTGCCAATAAACCCATACAGGTATCCGATATCAGTTTTGACGAAGATCAGCGGATACTCACGCCCGACAAC
GAGTTTAACCGCGTACTGGGTGGCGGTATTGTAGCCGGTTCGTTGGTATTGATAGGCGGCGAACCGGGCATCGGTAAATC
GACCCTGATGCTGCAACTGGCGCTGAATATGCCATCCATGAAAGTGCTTTATGTGTCGGGCGAAGAAAGTGAGCGGCAGA
TCAAAATGCGGGCGGAACGATTGGTGCAGTCAGAAGTCAGAAGTCGGAAGTCAGAAGTCGATAACGTCAAATCCGAAATT
GAAAATTCGAAATTCGAAATAGGATCAGAATGTTATATATTAACCGAAACATCTACCCAAAATATATTCAAGCAGATAGA
ACAACTGGAACCTGATATGGTGGTTATCGATTCGATACAGACGCTGTATTCTTCCCATATCGAATCGACACCCGGGAGCG
TGTCGCAGGTACGGGAATGTACCGCCGAATTGCTTCGTTTTGCCAAAGAATCGGGCACGCCGGTATTCCTGATCGGGCAC
ATCACGAAGGACGGCATGATAGCCGGACCAAAAATACTGGAGCACATGGTAGATACCGTTCTGCAATTCGAGGGCGACAG
GCACCATGTTTACCGTATCCTGCGCGCTGTGAAAAACCGTTTCGGTTCGGCATCCGAACTGGGTATTTATGAAATGCTGG
GCGAAGGCCTGCGCGAAGTATCCAACCCATCAGAGATATTGCTCTCGCAGCGCGACGAGCCATTGAGCGGCATCACCATT
TCGGCTACGCTGGAAGGAATGCGGCCGATGCTGATAGAAACGCAGGCATTGGTTAGTACGTCAGCCTATGGCACCCCTCA
GCGTACCGCTACGGGCTTTGATACCAAGCGCATGAACATGTTGCTAGCTGTGCTCGAAAAGCGTTGCGGCTTCAAATTGG
GGGGTAAGGACGTCTTTTTGAATATCACAGGCGGTATCAGTGTGGAGGACCCTGCCATCGACCTCGGCCTGGCCGCGGCT
ATCATCTCGTCGCACGAGGATATCCCTATCCCCTTCAAAACTTGCTTTGCGGGCGAGATCGGCTTATCGGGCGAGGTACG
AGCGGTGAACCGTATCGAACAGCGTATTGCCGAGGCCCAAAAGCTTGGCTTCGAGCAGATATTTATTTCGAAATACAACC
TGGAATCGGGCGGACAAAATAAAAAGCGCATCGATTTGACGCGCTACAATATTGCCGTTAAAACTGTAGGCAGTATTGAG
GAGGTCTTCAGCGCATTATTTGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-453)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8URB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.516

93.648

0.492
  radA Streptococcus pneumoniae Rx1

47.853

100

0.48
  radA Streptococcus pneumoniae D39

47.853

100

0.48
  radA Streptococcus pneumoniae R6

47.853

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.853

100

0.48
  radA Streptococcus mitis NCTC 12261

47.648

100

0.477
  radA Streptococcus mitis SK321

49.451

93.238

0.461

Multiple sequence alignment