Detailed information NTG0377892

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FRZ67_RS19615
• Genome accession: NZ_CP042435
• Coordinates: 4643209..4644585 (-)
• Length: 458 a.a.
• NCBI ID: WP_225975405.1
• Uniprot ID: -
• Organism: Panacibacter ginsenosidivorans strain Gsoil1550
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4638209..4649585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FRZ67_RS19595 (FRZ67_19595)	-	4638926..4640146 (-)	1221	WP_147192275.1	hypothetical protein	-
FRZ67_RS19600 (FRZ67_19600)	-	4640241..4640810 (-)	570	WP_147192276.1	glutathione peroxidase	-
FRZ67_RS19605 (FRZ67_19605)	-	4640893..4642284 (-)	1392	WP_147192277.1	choice-of-anchor Q domain-containing protein	-
FRZ67_RS19610 (FRZ67_19610)	-	4642468..4643169 (-)	702	WP_147192278.1	ComF family protein	-
FRZ67_RS19615 (FRZ67_19615)	radA	4643209..4644585 (-)	1377	WP_225975405.1	DNA repair protein RadA	Machinery gene
FRZ67_RS19620 (FRZ67_19620)	-	4645197..4648298 (+)	3102	WP_147192279.1	TonB-dependent receptor	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 51012.66 Da
• Isoelectric Point: 5.8369

>NTDB_id=377892 FRZ67_RS19615 WP_225975405.1 4643209..4644585(-) (radA) [Panacibacter ginsenosidivorans strain Gsoil1550]
MMSKIKTAFFCGNCGYESTKWLGKCPSCNQWNTFIEEVIDKGNSKTQDNWKTYNTEKRSTAVIALTDVTSKEEKRITTND
PELNRVLGGGIVPGSIVLVAGEPGIGKSTLMLQDALELKNIVTLYISGEESEQQIKMRADRLKISNENFYLLTETSTHII
FQEIKKLKPDFVIVDSIQTLQSDIAESSPGSITQIRECAAAFQRFAKETDTPVFLIGHITKDGTIAGPKLLEHMVDTVLQ
FEGDRHYAYRILRTLKNRFGSTAELGIYEMTGDGMRAVLNPSEILINQKEEQLSGSAIAASMEGMRPLLIEVQALVTQSV
YGTPQRTVTGFDLRRLQLLLAVLEKRGGFQFGVKDVFVNIAGGLKVEDPSIDLSVICALLSSYEDVPLPAHICFAGEVGL
NGEIRAVNRIEQRIAEAEKLGFEKIVVSKFNKKGFDKNQFKIEIVALTRVDEVYRYLF

Nucleotide

• Length: 1377 bp

>NTDB_id=377892 FRZ67_RS19615 WP_225975405.1 4643209..4644585(-) (radA) [Panacibacter ginsenosidivorans strain Gsoil1550]
ATGATGAGTAAAATTAAGACCGCATTCTTTTGTGGTAACTGTGGTTATGAAAGCACCAAATGGCTTGGCAAGTGTCCTTC
ATGTAATCAATGGAATACATTTATCGAAGAGGTGATTGATAAAGGCAACAGTAAAACACAAGATAACTGGAAAACATACA
ACACAGAAAAAAGATCAACAGCTGTAATTGCGTTAACTGATGTTACCAGCAAAGAAGAAAAGAGAATTACAACAAATGAT
CCCGAATTGAATCGTGTTCTTGGCGGGGGAATTGTTCCAGGTAGTATTGTACTTGTTGCAGGGGAGCCCGGAATTGGTAA
GAGTACATTAATGTTGCAGGATGCTTTAGAGTTAAAAAATATTGTAACCTTATACATAAGCGGTGAAGAAAGTGAACAGC
AAATAAAAATGCGTGCTGACCGCCTCAAAATTAGTAATGAAAATTTTTACTTACTAACAGAAACTTCAACGCATATTATT
TTCCAGGAGATCAAAAAACTAAAACCTGATTTTGTAATTGTTGATTCGATTCAAACATTGCAATCTGATATTGCAGAATC
ATCCCCCGGAAGTATCACGCAAATACGTGAATGCGCTGCCGCTTTCCAGCGCTTTGCAAAAGAAACAGACACACCTGTTT
TTTTGATTGGGCACATTACAAAAGACGGAACTATTGCTGGACCAAAATTATTAGAGCACATGGTTGATACAGTTTTGCAA
TTCGAAGGTGATCGTCATTATGCATACCGCATATTACGTACGCTAAAAAATCGTTTTGGCAGCACTGCGGAGCTTGGTAT
TTATGAAATGACAGGTGATGGTATGCGTGCCGTATTAAATCCATCTGAGATTCTTATCAATCAAAAAGAAGAACAACTAA
GCGGCAGCGCAATTGCAGCAAGCATGGAAGGTATGCGTCCATTATTAATTGAAGTGCAGGCATTAGTAACCCAGAGTGTA
TATGGCACACCGCAACGTACTGTTACTGGTTTTGATCTTAGGAGACTGCAACTCTTACTCGCAGTACTTGAAAAACGTGG
CGGTTTTCAGTTCGGTGTTAAAGATGTATTTGTAAATATTGCGGGGGGCTTAAAAGTAGAAGATCCGTCAATTGATCTTT
CAGTCATTTGTGCGCTGTTGTCTTCTTATGAAGATGTGCCATTGCCTGCGCATATTTGTTTTGCAGGTGAAGTTGGCTTG
AATGGTGAGATACGCGCCGTGAATAGAATTGAACAGCGCATTGCGGAAGCAGAAAAACTGGGCTTTGAAAAGATCGTTGT
ATCTAAATTCAATAAGAAAGGTTTTGATAAAAATCAATTTAAAATAGAAATAGTTGCACTTACAAGAGTTGATGAAGTAT
ATCGTTATTTATTTTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (73-223)

• Subunit ChlI of Mg-chelatase (ChlI) (345-430)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.455	100	0.496
radA	Streptococcus mitis SK321	48.69	100	0.487
radA	Streptococcus mitis NCTC 12261	48.69	100	0.487
radA	Streptococcus pneumoniae Rx1	48.69	100	0.487
radA	Streptococcus pneumoniae D39	48.69	100	0.487
radA	Streptococcus pneumoniae R6	48.69	100	0.487
radA	Streptococcus pneumoniae TIGR4	48.69	100	0.487