Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FSB75_RS14895 Genome accession   NZ_CP042433
Coordinates   3527007..3528380 (-) Length   457 a.a.
NCBI ID   WP_146789108.1    Uniprot ID   A0A5B8UKP2
Organism   Flavisolibacter ginsenosidimutans strain Gsoil 636     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3522007..3533380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSB75_RS14875 (FSB75_14875) - 3522761..3523975 (-) 1215 WP_146789102.1 hypothetical protein -
  FSB75_RS14880 (FSB75_14880) - 3524087..3524653 (-) 567 WP_146789104.1 glutathione peroxidase -
  FSB75_RS14885 (FSB75_14885) - 3524744..3526147 (-) 1404 WP_227990597.1 choice-of-anchor Q domain-containing protein -
  FSB75_RS14890 (FSB75_14890) - 3526165..3526872 (-) 708 WP_146789106.1 ComF family protein -
  FSB75_RS14895 (FSB75_14895) radA 3527007..3528380 (-) 1374 WP_146789108.1 DNA repair protein RadA Machinery gene
  FSB75_RS14900 (FSB75_14900) - 3528803..3529495 (+) 693 WP_146789110.1 zinc metallopeptidase -
  FSB75_RS14905 (FSB75_14905) - 3529627..3532824 (+) 3198 WP_146789112.1 SusC/RagA family TonB-linked outer membrane protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50829.28 Da        Isoelectric Point: 5.5651

>NTDB_id=377873 FSB75_RS14895 WP_146789108.1 3527007..3528380(-) (radA) [Flavisolibacter ginsenosidimutans strain Gsoil 636]
MAKVKTAYFCQVCGYESAKWTGKCPSCGQWNTMVEELIQKDNKKAANDWEDYRENGSTKKTRHLNEVEMRDHSRLLTVDA
ELNRVLGGGIVPGSIVLVAGEPGIGKSTLFLQMGLQLKDAVVLYISGEESDEQIKMRADRLGIQSENFYLLTETSTNVIF
QEIKKLKPQVIIVDSIQTLESSFIESSPGSVSQIRECAAEFQQFAKETSTPVFLIGHITKEGSIAGPKLLEHMVDTVLQF
EGDRHYAYRILRTLKNRFGSTAELGIYQMNDNGMNPVVNPSEILITQKEEDLGGIAIAATIEGQRPLLIEVQALVTQSVY
GTPQRTVSGFDTRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGLKVEDPSIDLAVLAALLSSYEDTTIPHDVCFAGEVGLS
GEIRAVNRIEQRIAEAEKLGFSKIIVSKYNQKGLSKKKFDIEIITMGRVDEMYRYLF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=377873 FSB75_RS14895 WP_146789108.1 3527007..3528380(-) (radA) [Flavisolibacter ginsenosidimutans strain Gsoil 636]
ATGGCGAAAGTAAAAACAGCGTATTTCTGCCAGGTATGCGGGTATGAAAGCGCAAAGTGGACGGGTAAATGTCCGTCGTG
CGGACAGTGGAATACAATGGTAGAAGAACTCATTCAAAAAGACAACAAGAAGGCCGCAAACGATTGGGAGGATTACCGTG
AAAACGGGAGCACAAAGAAAACAAGACACCTCAATGAAGTAGAAATGAGAGACCATTCGCGGTTGTTAACCGTAGATGCG
GAACTCAATCGCGTATTGGGCGGCGGCATTGTTCCGGGGAGCATTGTATTGGTAGCGGGAGAACCGGGCATCGGCAAAAG
CACCTTGTTTTTGCAAATGGGTTTGCAACTAAAAGACGCGGTTGTTCTTTACATCAGCGGTGAAGAAAGCGACGAACAAA
TTAAAATGCGAGCTGACCGTTTGGGTATTCAAAGCGAAAACTTTTACCTGCTTACCGAAACATCCACGAACGTTATTTTC
CAGGAAATAAAAAAACTAAAGCCACAGGTCATCATCGTTGACTCCATCCAAACTCTCGAATCATCTTTTATTGAATCATC
ACCTGGTTCCGTTTCGCAAATAAGAGAATGCGCTGCCGAATTTCAACAGTTCGCAAAAGAGACCTCTACGCCTGTGTTCT
TAATTGGTCACATTACCAAAGAAGGTTCCATAGCGGGTCCCAAACTTTTAGAACATATGGTGGACACGGTGTTGCAGTTT
GAAGGTGACCGTCATTATGCTTACCGCATTTTGCGAACGCTAAAAAACCGCTTTGGCAGCACCGCCGAATTGGGCATCTA
CCAAATGAACGACAACGGCATGAACCCCGTGGTAAACCCAAGCGAAATTCTCATTACGCAAAAAGAAGAAGACCTTGGCG
GTATTGCCATTGCGGCTACTATTGAAGGACAACGGCCATTGTTAATCGAAGTGCAGGCACTCGTAACCCAGTCGGTTTAC
GGAACGCCGCAACGCACCGTTAGCGGCTTTGATACGCGAAGGCTTCAACTCTTGTTAGCCGTGCTAGAAAAACGCGGCGG
CTTTCATTTTGGCGTGAAAGATGTCTTCTTGAACATCGCCGGCGGCTTAAAAGTGGAAGACCCTTCTATTGATTTGGCTG
TGTTAGCGGCCTTGCTTTCATCTTATGAAGACACGACCATTCCGCATGACGTTTGCTTTGCCGGCGAAGTAGGGTTGAGC
GGCGAGATTCGCGCCGTTAACCGCATTGAGCAACGCATTGCCGAAGCGGAAAAATTGGGCTTCAGCAAAATCATTGTTTC
GAAGTACAACCAGAAAGGTTTGAGCAAAAAGAAATTTGACATCGAAATCATCACCATGGGAAGGGTAGATGAAATGTATC
GGTATCTATTCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(320-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8UKP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.655

100

0.508
  radA Streptococcus mitis NCTC 12261

48.69

100

0.488
  radA Streptococcus pneumoniae Rx1

48.69

100

0.488
  radA Streptococcus pneumoniae D39

48.69

100

0.488
  radA Streptococcus pneumoniae R6

48.69

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.69

100

0.488
  radA Streptococcus mitis SK321

48.472

100

0.486

Multiple sequence alignment