Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FSB84_RS08790 Genome accession   NZ_CP042431
Coordinates   2142615..2143991 (-) Length   458 a.a.
NCBI ID   WP_130541913.1    Uniprot ID   A0A4Q7MRM3
Organism   Pseudobacter ginsenosidimutans strain Gsoil 221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2137615..2148991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSB84_RS08770 (FSB84_08770) - 2138686..2139891 (-) 1206 WP_130541917.1 DNA polymerase III subunit delta' -
  FSB84_RS08775 (FSB84_08775) - 2139919..2140389 (-) 471 WP_207234315.1 glutathione peroxidase -
  FSB84_RS08780 (FSB84_08780) - 2140493..2141887 (-) 1395 WP_130541915.1 choice-of-anchor Q domain-containing protein -
  FSB84_RS08785 (FSB84_08785) - 2141908..2142606 (-) 699 WP_130541914.1 ComF family protein -
  FSB84_RS08790 (FSB84_08790) radA 2142615..2143991 (-) 1377 WP_130541913.1 DNA repair protein RadA Machinery gene
  FSB84_RS08795 (FSB84_08795) - 2143992..2144225 (+) 234 WP_130541912.1 hypothetical protein -
  FSB84_RS08800 (FSB84_08800) - 2144581..2145273 (+) 693 WP_130541911.1 zinc metallopeptidase -
  FSB84_RS08805 (FSB84_08805) - 2146574..2148127 (-) 1554 WP_130541910.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50890.38 Da        Isoelectric Point: 5.7846

>NTDB_id=377852 FSB84_RS08790 WP_130541913.1 2142615..2143991(-) (radA) [Pseudobacter ginsenosidimutans strain Gsoil 221]
MSKIKTAFFCSNCGYESPKWSGKCPSCGNWNTFIEEVIHKDVSQKEKQWKNDDEKNGTAKTIALNEIKSNAQERIITGDA
ELNRVLGGGIVPGSLVLVAGEPGIGKSTLFLQIALQMKNITTLYISGEESDQQIKLRADRLKIQNDSFYLLTETLTQTIF
QEIKKLKPDLVIVDSIQTIQSPYIDSSPGSVSQIRETTAEFQRFAKDTHIPVFLIGHITKDGSIAGPKILEHMVDTVLQF
EGDRHYAYRILRTLKNRFGSTAELGIYEMGADGMRGVNNPSDILLSQKEEQLSGIAIAATIEGMRPLLVEVQALVTQSVY
GTPQRTVSGFDLRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGLKVEDPSIDLAVLSALLSSYEDIPLPYDICFAGEVGLS
GEIRAVNRIEQRIAEAEKLGFEKIIVSKYTQKAISQQSFNIEVIQMARVEELYRYLFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=377852 FSB84_RS08790 WP_130541913.1 2142615..2143991(-) (radA) [Pseudobacter ginsenosidimutans strain Gsoil 221]
ATGAGTAAAATAAAAACCGCCTTCTTCTGTTCGAACTGTGGTTATGAAAGTCCAAAGTGGTCCGGTAAATGTCCTTCATG
TGGTAACTGGAATACTTTCATTGAAGAAGTGATCCATAAAGATGTTTCCCAAAAAGAGAAGCAATGGAAAAACGATGATG
AGAAAAACGGAACAGCAAAAACGATCGCGCTGAATGAAATAAAAAGTAATGCACAGGAACGCATCATCACCGGAGATGCA
GAGCTGAACAGGGTTTTAGGCGGTGGCATTGTTCCCGGAAGTCTTGTTCTCGTGGCCGGCGAACCAGGCATCGGTAAGTC
TACGCTCTTTCTGCAAATCGCTTTGCAGATGAAAAACATTACAACACTTTATATCAGCGGGGAAGAAAGCGATCAACAGA
TCAAACTCCGCGCAGACCGTTTGAAAATCCAGAACGATTCTTTTTATCTGCTCACGGAAACCCTCACACAAACTATTTTC
CAGGAGATCAAAAAACTGAAACCAGACCTGGTAATAGTAGATTCCATTCAAACCATTCAAAGCCCTTACATAGATTCTTC
TCCCGGAAGTGTTTCGCAGATCCGCGAAACCACTGCAGAATTCCAGCGCTTCGCGAAAGACACGCATATTCCTGTTTTCC
TGATCGGACATATCACAAAAGATGGAAGTATTGCGGGCCCGAAAATACTGGAACATATGGTGGATACTGTACTGCAATTT
GAGGGCGACAGACACTATGCTTACCGCATCCTCCGGACCCTCAAAAACCGCTTCGGGAGCACCGCGGAGCTGGGAATCTA
CGAAATGGGGGCAGACGGGATGCGGGGCGTGAACAATCCCAGCGATATCCTCCTGAGCCAGAAGGAGGAACAGCTCAGCG
GAATCGCCATTGCCGCTACCATCGAAGGCATGCGCCCCCTCCTGGTGGAAGTGCAGGCCCTGGTGACCCAGTCGGTTTAC
GGAACACCGCAAAGAACGGTTTCGGGTTTCGACCTGCGCAGGCTTCAGCTCCTCCTGGCCGTACTTGAAAAAAGAGGCGG
CTTCCATTTCGGAGTCAAAGATGTTTTTCTCAATATCGCAGGCGGACTCAAAGTGGAAGACCCGAGCATCGATCTCGCCG
TTCTCTCCGCATTGCTGAGCTCTTATGAAGACATTCCGCTTCCCTATGATATTTGTTTCGCAGGTGAAGTTGGTCTCAGC
GGAGAGATCAGAGCCGTGAACAGGATCGAACAAAGGATCGCCGAAGCAGAGAAACTCGGCTTTGAAAAGATCATCGTTTC
CAAATACACCCAAAAAGCAATCAGTCAGCAATCCTTCAATATTGAAGTAATACAGATGGCAAGGGTTGAAGAACTCTACC
GCTATCTTTTCGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(74-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q7MRM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

50.109

100

0.502
  radA Streptococcus mitis SK321

50.109

100

0.502
  radA Streptococcus mitis NCTC 12261

50.109

100

0.502
  radA Streptococcus pneumoniae TIGR4

50.109

100

0.502
  radA Streptococcus pneumoniae D39

50.109

100

0.502
  radA Streptococcus pneumoniae R6

50.109

100

0.502
  radA Bacillus subtilis subsp. subtilis str. 168

49.565

100

0.498

Multiple sequence alignment