Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL80_RS04410 Genome accession   NZ_CP042420
Coordinates   862218..864008 (+) Length   596 a.a.
NCBI ID   WP_055308314.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3622     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 857218..869008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL80_RS04390 (FGL80_04390) - 857320..858768 (+) 1449 WP_055308316.1 ABC transporter substrate-binding protein/permease -
  FGL80_RS04395 (FGL80_04395) - 858765..859517 (+) 753 WP_010001360.1 amino acid ABC transporter ATP-binding protein -
  FGL80_RS04400 (FGL80_04400) - 859621..861060 (+) 1440 WP_055308403.1 ABC transporter substrate-binding protein/permease -
  FGL80_RS04405 (FGL80_04405) - 861109..862137 (+) 1029 WP_055308315.1 competence protein CoiA family protein -
  FGL80_RS04410 (FGL80_04410) pepF 862218..864008 (+) 1791 WP_055308314.1 oligoendopeptidase F Regulator
  FGL80_RS04415 (FGL80_04415) - 864081..864479 (+) 399 WP_010001365.1 cytidine deaminase -
  FGL80_RS04420 (FGL80_04420) - 864526..865449 (+) 924 WP_055308313.1 phosphoglycerate dehydrogenase -
  FGL80_RS04425 (FGL80_04425) - 865484..866458 (-) 975 WP_055308312.1 LacI family DNA-binding transcriptional regulator -
  FGL80_RS04430 (FGL80_04430) - 866640..867656 (+) 1017 WP_055308311.1 zinc-dependent alcohol dehydrogenase family protein -
  FGL80_RS04435 (FGL80_04435) - 867713..868096 (+) 384 WP_055308310.1 VOC family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67446.98 Da        Isoelectric Point: 4.3874

>NTDB_id=377819 FGL80_RS04410 WP_055308314.1 862218..864008(+) (pepF) [Leuconostoc lactis strain CBA3622]
MAQLQRDEVPEELTWDLTSIFATDDEWETAYDAVHQGAHALKQFVGHVGDSAQTLQTALEADLDLERQLEKVYVYAHQIY
DQDTTNQKYAAFNSRAQALWSEVSEATAYFQPEVLNIPEETLTNYLKTAGLQPYQHLFDQILAQKPYTLPAEQEALLAGA
GDIFNASENTFGALDNSDMTFGDVHTETGEVVPLTNGLYSLLLESKSRELRQEAFETLYDSYIALQNTFASTLSSHVKGH
NYLAKVRHYRSAREAAILPHSLPTSVFETLRETVDANLPLLHRFVSLRKQVLGVDDIHSYDLYVPLVDEIDFDVTYDKAK
DIVLAALAPLGPDYIAVVKKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRQ
AQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGVALTAD
AMSTYYAALNQKYYGPDLFPDEEIAYEWARIPHFYYNYYVYQYATGEAAATTLADRILNQNGAEAYKDYLKAGASDYPLA
VIGQAGVDMTQADYLKEAFGVFEKRLDQLTDLLVHK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=377819 FGL80_RS04410 WP_055308314.1 862218..864008(+) (pepF) [Leuconostoc lactis strain CBA3622]
ATGGCACAACTACAACGCGATGAAGTACCTGAAGAGTTAACTTGGGATTTGACCTCCATTTTTGCAACCGATGACGAGTG
GGAAACAGCTTACGATGCTGTGCATCAAGGGGCACATGCTCTGAAGCAATTTGTGGGGCATGTTGGTGATTCAGCCCAAA
CGTTGCAAACAGCACTGGAAGCTGATCTTGATTTGGAACGTCAATTGGAAAAAGTCTACGTCTATGCGCACCAAATTTAT
GATCAAGATACGACGAATCAAAAATATGCCGCTTTTAATAGCCGTGCGCAAGCACTTTGGTCTGAAGTAAGTGAAGCAAC
AGCTTACTTCCAACCCGAAGTGCTTAATATTCCAGAAGAAACGTTGACAAACTATTTGAAGACGGCAGGGTTACAACCTT
ACCAACATTTATTTGACCAAATTCTGGCGCAAAAGCCTTACACATTGCCAGCAGAACAGGAAGCACTTCTGGCCGGAGCT
GGGGATATTTTTAATGCTTCAGAAAACACTTTTGGTGCGTTAGATAATTCCGACATGACGTTTGGGGATGTCCATACTGA
AACGGGTGAAGTGGTGCCATTGACAAATGGCCTTTACAGTCTGTTGTTGGAATCTAAGTCACGTGAATTGCGCCAAGAAG
CGTTTGAAACATTGTACGATAGTTACATTGCCTTGCAAAACACTTTCGCGTCAACGTTATCGTCACATGTCAAAGGTCAT
AATTATTTAGCTAAAGTGCGTCACTATCGCTCAGCACGGGAAGCAGCCATTCTACCACACAGCCTACCAACATCAGTGTT
TGAAACGTTGCGTGAAACGGTTGATGCCAATTTGCCACTGTTGCATCGTTTTGTATCACTCCGTAAGCAAGTTTTGGGCG
TTGACGATATTCACTCATATGACCTCTACGTACCGTTAGTCGATGAGATTGATTTTGATGTCACGTATGACAAAGCCAAA
GACATTGTGTTAGCCGCTTTGGCACCATTAGGACCAGATTATATTGCCGTGGTTAAAAAGGCCTTTGACGAACGCTGGAT
TGATGTGGTGGAAAATAAGGGTAAGCGTACTGGTGCTTATTCGAGCGGCACATATGACACGAACCCATTTATTTTGTTAA
ATTGGCAAAATAACTTAAATAACGTTTACACTTTGGCCCATGAAATGGGGCACTCGGTGCATTCTTATTTGACCCGTCAA
GCACAACCTTATCATTATGGTGATTACCCAATTTTCCTAGCTGAAATTGCATCAACAACCAATGAAAGCCTACTCACGGA
TTATTTGTTAAAGACAAATGATGATCCAAAATTCCAAGCCTATGTGTTGAATCAATATCTTGATGGCTTTAAGGGCACGG
TGTTCCGACAGACCCAATTTGCGGAATTTGAAGATTGGATTCATGAACAAAGTGCAGCTGGGGTGGCGTTAACAGCTGAC
GCGATGAGTACGTACTATGCGGCATTGAATCAAAAGTACTATGGCCCAGATCTCTTCCCAGATGAAGAAATCGCGTATGA
ATGGGCGCGTATTCCACATTTCTACTACAACTATTATGTCTATCAATATGCCACTGGTGAAGCCGCAGCGACGACTTTGG
CTGATCGTATCTTGAATCAGAATGGGGCAGAAGCGTATAAAGACTACTTAAAGGCCGGTGCCTCAGACTATCCATTAGCC
GTTATCGGCCAAGCAGGGGTTGATATGACGCAAGCGGATTATTTGAAGGAAGCCTTTGGCGTGTTTGAAAAGCGTCTCGA
TCAGTTGACAGATTTGTTAGTTCACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.299

99.161

0.529

Multiple sequence alignment