Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HB752_RS07085 Genome accession   NZ_CP050271
Coordinates   1442239..1442721 (+) Length   160 a.a.
NCBI ID   WP_002278778.1    Uniprot ID   -
Organism   Streptococcus mutans strain S1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437239..1447721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS07070 (HB752_07070) rpoZ 1439064..1439381 (-) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -
  HB752_RS07075 (HB752_07075) gmk 1439405..1440037 (-) 633 WP_002263045.1 guanylate kinase -
  HB752_RS07080 (HB752_07080) - 1440487..1442094 (-) 1608 WP_002263046.1 ribonuclease Y -
  HB752_RS07085 (HB752_07085) luxS 1442239..1442721 (+) 483 WP_002278778.1 S-ribosylhomocysteine lyase Regulator
  HB752_RS07090 (HB752_07090) - 1442882..1444522 (-) 1641 WP_019804669.1 cell division site-positioning protein MapZ family protein -
  HB752_RS07095 (HB752_07095) - 1444538..1445692 (-) 1155 WP_002266358.1 class I SAM-dependent RNA methyltransferase -
  HB752_RS07105 (HB752_07105) gpsB 1446142..1446480 (-) 339 WP_002263050.1 cell division regulator GpsB -
  HB752_RS07110 (HB752_07110) - 1446586..1447107 (-) 522 WP_002263051.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18006.64 Da        Isoelectric Point: 6.1364

>NTDB_id=377789 HB752_RS07085 WP_002278778.1 1442239..1442721(+) (luxS) [Streptococcus mutans strain S1]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEITNTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=377789 HB752_RS07085 WP_002278778.1 1442239..1442721(+) (luxS) [Streptococcus mutans strain S1]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTACTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAACTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369