Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL87_RS00040 Genome accession   NZ_CP042413
Coordinates   5316..7133 (-) Length   605 a.a.
NCBI ID   WP_004905940.1    Uniprot ID   -
Organism   Leuconostoc citreum strain CBA3624     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 316..12133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL87_RS00010 (FGL87_00010) - 531..914 (-) 384 WP_004907397.1 VOC family protein -
  FGL87_RS00015 (FGL87_00015) - 980..1711 (-) 732 WP_004900146.1 hypothetical protein -
  FGL87_RS00020 (FGL87_00020) - 1716..2732 (-) 1017 WP_004900149.1 zinc-dependent alcohol dehydrogenase family protein -
  FGL87_RS00025 (FGL87_00025) - 2922..3890 (+) 969 WP_040189884.1 LacI family DNA-binding transcriptional regulator -
  FGL87_RS00030 (FGL87_00030) - 3923..4843 (-) 921 WP_004905936.1 NAD(P)-dependent oxidoreductase -
  FGL87_RS00035 (FGL87_00035) - 4863..5264 (-) 402 WP_004907398.1 cytidine deaminase -
  FGL87_RS00040 (FGL87_00040) pepF 5316..7133 (-) 1818 WP_004905940.1 oligoendopeptidase F Regulator
  FGL87_RS00045 (FGL87_00045) - 7191..8228 (-) 1038 WP_040176608.1 competence protein CoiA family protein -
  FGL87_RS00050 (FGL87_00050) - 8277..9716 (-) 1440 WP_004905944.1 ABC transporter substrate-binding protein/permease -
  FGL87_RS00055 (FGL87_00055) - 9811..10563 (-) 753 WP_004900167.1 amino acid ABC transporter ATP-binding protein -
  FGL87_RS00060 (FGL87_00060) - 10560..12008 (-) 1449 WP_146972522.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68860.72 Da        Isoelectric Point: 4.7443

>NTDB_id=377762 FGL87_RS00040 WP_004905940.1 5316..7133(-) (pepF) [Leuconostoc citreum strain CBA3624]
MKQQVLISNNMPQIKRHEVPTALTWDLTTIFSSDEAWEKTFQKVHESAQNMTRFVGHVGDSADMLQAALVADLSLERLLE
KVYVYAHQIYDQDTTNQQYAAFNARVQALWAEVSEATAYFQPEVLRIPDTVLAEYLATPGLEPFSHLFDTIRLQKPHTLP
VEQEALLAGASDIFNASENTFGVLDNSDLSFGDVHTETGELVPLTNGLYSLLLESQSRDLRQEAFDTLYDSYISFQNTFA
STLSSHVKGHNFLAKARHYDSAREAAILPHGLPTTVFETLRKSVNDHLPLLHRFVSLRRQVLGVEDVHSYDLYVPLVDDV
TFDVSYDKAQDIVIKALAPLGEDYVRIVQRAFDERWIDVVENKGKRTGAYSSGAYDTNPFILLNWQDNLNNVYTLAHELG
HSVHSYLTRHTQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNHDPKVQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHQQ
AAEGEALTADKMSSYYGELNQKYYGPDLFPDEAIAYEWARIPHFYYNYYVYQYATGEAAATTLADRIINHDGANDYKNYL
RAGASDYPLNVIGKAGVDMSQSDYLNQAFHVFETRLNQLEKLLAN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=377762 FGL87_RS00040 WP_004905940.1 5316..7133(-) (pepF) [Leuconostoc citreum strain CBA3624]
ATGAAGCAGCAAGTGTTGATCAGTAATAATATGCCACAGATAAAGCGTCATGAAGTGCCAACAGCGTTAACATGGGATTT
AACAACTATTTTTTCATCAGATGAGGCCTGGGAAAAGACTTTTCAAAAAGTTCATGAATCAGCTCAAAATATGACGCGTT
TCGTTGGGCACGTCGGTGATTCGGCTGACATGTTACAAGCGGCATTAGTGGCAGATTTATCGTTGGAACGTTTATTAGAG
AAAGTTTACGTCTACGCCCACCAAATATATGATCAAGACACAACTAATCAGCAGTATGCAGCATTTAACGCTCGAGTACA
GGCGCTTTGGGCTGAAGTTAGTGAAGCGACGGCCTATTTTCAGCCTGAAGTATTGCGCATTCCTGATACGGTATTAGCTG
AGTATCTAGCAACACCTGGGTTAGAACCATTTAGTCATTTATTTGATACGATTCGTTTACAAAAGCCACACACACTACCT
GTTGAACAAGAAGCGCTACTAGCTGGTGCTAGTGATATTTTTAATGCGTCTGAAAATACATTTGGTGTGCTTGATAATTC
AGATCTGTCTTTCGGAGATGTACATACTGAAACAGGTGAACTGGTGCCTTTGACTAATGGTTTGTACAGTCTATTATTAG
AATCGCAATCACGCGACCTACGTCAGGAAGCATTTGATACACTCTATGACAGCTATATTAGTTTTCAAAATACTTTTGCT
TCAACACTGTCATCGCATGTGAAAGGCCATAATTTCTTGGCGAAAGCACGACATTATGATTCAGCGCGCGAGGCCGCTAT
TTTACCACATGGCTTACCTACAACGGTTTTTGAGACCCTAAGAAAATCAGTTAATGATCATTTGCCATTACTACATCGAT
TTGTCTCGTTACGTCGTCAAGTGTTGGGTGTTGAAGACGTCCATAGCTATGACTTATACGTGCCCTTAGTTGATGATGTT
ACATTTGATGTTTCCTATGATAAGGCGCAAGACATTGTGATTAAAGCATTAGCGCCATTGGGCGAGGATTATGTGCGTAT
TGTCCAGCGTGCCTTTGATGAACGTTGGATAGATGTTGTTGAAAACAAGGGTAAACGGACAGGAGCATACTCTAGCGGCG
CGTACGATACCAATCCTTTTATTCTATTGAATTGGCAAGATAATTTAAATAATGTTTATACTTTAGCTCATGAGTTGGGA
CATTCTGTTCATTCTTATTTAACAAGACATACACAACCTTATCATTACGGTGACTACCCCATTTTTTTGGCAGAAATTGC
TTCTACAACGAATGAAAGTCTATTAACAGATTATTTACTGAAAACTAATCATGATCCTAAGGTGCAAGCTTATGTCTTGA
ACCAATATCTAGACGGTTTCAAAGGGACGGTCTTTAGACAAACGCAATTTGCAGAATTTGAAGATTGGATTCATCAACAA
GCTGCTGAGGGCGAGGCTCTAACGGCTGATAAAATGAGTAGTTATTATGGTGAATTAAATCAAAAGTATTATGGCCCAGA
TTTGTTTCCTGATGAGGCTATTGCGTATGAGTGGGCACGAATTCCGCATTTTTATTACAATTACTATGTTTATCAATATG
CAACAGGTGAAGCAGCTGCTACAACACTAGCTGACCGTATTATCAATCACGATGGTGCTAATGACTACAAAAATTATTTA
CGTGCTGGCGCCTCTGATTATCCGCTAAATGTTATTGGAAAAGCTGGTGTTGATATGAGCCAGTCAGATTATCTGAACCA
AGCTTTCCATGTCTTTGAAACGCGACTGAACCAGTTAGAAAAGTTACTCGCAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(212-589)

Oligopeptidase F (Peptidase_M3_N)

(123-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.182

0.506

Multiple sequence alignment