Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL73_RS06035 Genome accession   NZ_CP042408
Coordinates   1287961..1289766 (-) Length   601 a.a.
NCBI ID   WP_146978202.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282961..1294766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS06020 (FGL73_06020) alaS 1283311..1285929 (-) 2619 WP_146978201.1 alanine--tRNA ligase -
  FGL73_RS06025 (FGL73_06025) - 1286195..1287121 (-) 927 WP_058205148.1 peptidyl-prolyl cis-trans isomerase -
  FGL73_RS06030 (FGL73_06030) - 1287275..1287958 (-) 684 WP_104141523.1 O-methyltransferase -
  FGL73_RS06035 (FGL73_06035) pepF 1287961..1289766 (-) 1806 WP_146978202.1 oligoendopeptidase F Regulator
  FGL73_RS06040 (FGL73_06040) coiA 1289829..1290818 (-) 990 WP_058205151.1 competence protein CoiA Machinery gene
  FGL73_RS06045 (FGL73_06045) - 1290892..1291977 (-) 1086 WP_080739875.1 YdcF family protein -
  FGL73_RS06050 (FGL73_06050) - 1292127..1292975 (-) 849 WP_058205152.1 alpha/beta hydrolase -
  FGL73_RS06055 (FGL73_06055) - 1293168..1294589 (-) 1422 WP_012898314.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70049.85 Da        Isoelectric Point: 4.9247

>NTDB_id=377704 FGL73_RS06035 WP_146978202.1 1287961..1289766(-) (pepF) [Lactococcus lactis strain CBA3619]
MAMNRNEIPEKLTWDLTTIYKTDREWEAELTRIKSKLSLVEETDPGHLLDSAESLLTITEKMLSTSQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELQKLKNYDHMFERLFAKKAHTLSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMVQLTHGNYSSLMESKNREVRKAAYQALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALDNNFVPEKVYDVLMEAIHQHLPLLHRYIKLRKKILGISDFKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKEKVKVAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
SQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEDRQKYLEYLKAGSSAFP
LEVIAKAGVDMESSDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=377704 FGL73_RS06035 WP_146978202.1 1287961..1289766(-) (pepF) [Lactococcus lactis strain CBA3619]
ATGGCTATGAATAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAGAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCAAACTTTCACTCGTTGAAGAGACAGACCCTGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACCGAAAAAATGCTTTCCACTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCCAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTTTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAATTTTTAAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTCAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGACTTTTTGCTAAAAAAGCGCATACTCTTAGTCAAAAAGAGGAAAAGCTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAGATTTTTGATAATGCAGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGGTACAACTCACACATGGAAATTACTCTTCATTAATGGAAAGTAAGAATAGAGAAGTACGAAAAG
CAGCCTACCAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACCAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGTTCTTATGACTCAGCCCGTCAAGCTGCTTTGGATAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTACCACTTTTACATCGCTATATTAAACTACGTAAGAAAATTTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGAAAAAGTTAAAGTAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACATTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACACGTGAA
AGCCAACCTTATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACCACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAAGAGCGCTTCGCTCTTTTGAACCACTGGCTTGATAGTTTCCGTGGGACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCGGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTTTCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTAGTGATTACTTAGACGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.561

100

0.636

Multiple sequence alignment