Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HB753_RS07125 Genome accession   NZ_CP050270
Coordinates   1451849..1452442 (+) Length   197 a.a.
NCBI ID   WP_002263052.1    Uniprot ID   Q8DVL3
Organism   Streptococcus mutans strain S4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1446849..1457442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS07095 (HB753_07095) luxS 1446901..1447383 (+) 483 WP_002278778.1 S-ribosylhomocysteine lyase Regulator
  HB753_RS07100 (HB753_07100) - 1447544..1449184 (-) 1641 WP_019804669.1 cell division site-positioning protein MapZ family protein -
  HB753_RS07105 (HB753_07105) - 1449200..1450354 (-) 1155 WP_002266358.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  HB753_RS07115 (HB753_07115) gpsB 1450804..1451142 (-) 339 WP_002263050.1 cell division regulator GpsB -
  HB753_RS07120 (HB753_07120) - 1451248..1451769 (-) 522 WP_002263051.1 DUF1273 domain-containing protein -
  HB753_RS07125 (HB753_07125) recU 1451849..1452442 (+) 594 WP_002263052.1 Holliday junction resolvase RecU Machinery gene
  HB753_RS07130 (HB753_07130) pbp1a 1452543..1454438 (+) 1896 Protein_1403 penicillin-binding protein PBP1A -
  HB753_RS07135 (HB753_07135) pepC 1454774..1456108 (-) 1335 WP_019804667.1 aminopeptidase C -
  HB753_RS07140 (HB753_07140) nadE 1456220..1457044 (-) 825 WP_002288614.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22815.28 Da        Isoelectric Point: 10.1831

>NTDB_id=377675 HB753_RS07125 WP_002263052.1 1451849..1452442(+) (recU) [Streptococcus mutans strain S4]
MVNYPHHFIRKQSKPSQISKTINFANRGMSFEAAINATNNYYLSQKIAVIHKKPTPIQIVRVDYPRRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRHKTSIPMKNFHAHQIKHMSQVLDQKGICFVLLHFSTLRETYLLPASHLIHFYRIDNGG
KSMPLDYIKKNGYQVNVSAFPQVPYLDIIDKNILGGD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=377675 HB753_RS07125 WP_002263052.1 1451849..1452442(+) (recU) [Streptococcus mutans strain S4]
ATGGTCAACTATCCTCATCATTTCATTCGTAAACAAAGCAAACCCAGTCAAATATCTAAAACAATCAATTTTGCCAATCG
CGGAATGTCCTTTGAAGCAGCTATAAATGCGACAAATAACTACTATTTATCACAAAAAATAGCTGTTATCCATAAAAAAC
CAACTCCTATTCAAATTGTAAGGGTTGATTATCCTAGACGAAGTCGTGCTAAAATTGTTGAGGCTTATTTTAGGCAGGCT
TCAACAACCGACTACTCAGGAGTCTATAAAGGATATTACATTGATTTTGAAGCAAAAGAGACCAGACATAAGACATCTAT
TCCCATGAAAAACTTTCATGCACATCAGATCAAACATATGTCACAAGTTTTAGACCAAAAAGGTATTTGCTTTGTCTTAC
TGCATTTTTCCACACTTAGGGAGACCTATCTGCTTCCAGCCTCCCATCTAATCCATTTTTATCGGATTGATAATGGCGGG
AAGTCCATGCCACTTGATTATATCAAAAAAAATGGTTATCAGGTGAATGTGTCAGCTTTTCCTCAGGTTCCTTACTTAGA
TATTATTGATAAAAACATTTTAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.503