Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL77_RS05505 Genome accession   NZ_CP042392
Coordinates   1131388..1133199 (-) Length   603 a.a.
NCBI ID   WP_146988825.1    Uniprot ID   A0A5B8TI62
Organism   Loigolactobacillus coryniformis strain CBA3616     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126388..1138199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL77_RS05490 (FGL77_05490) - 1127967..1128578 (+) 612 WP_146988818.1 TMEM175 family protein -
  FGL77_RS05495 (FGL77_05495) - 1128735..1129880 (+) 1146 WP_146988820.1 hypothetical protein -
  FGL77_RS05500 (FGL77_05500) - 1130478..1131164 (-) 687 WP_146988823.1 phosphatase PAP2 family protein -
  FGL77_RS05505 (FGL77_05505) pepF 1131388..1133199 (-) 1812 WP_146988825.1 oligoendopeptidase F Regulator
  FGL77_RS05510 (FGL77_05510) - 1133414..1134013 (-) 600 WP_338086155.1 LysM domain-containing protein -
  FGL77_RS14805 - 1134645..1135010 (+) 366 WP_240049663.1 MFS transporter -
  FGL77_RS05515 (FGL77_05515) - 1134977..1135702 (+) 726 WP_240049664.1 MFS transporter -
  FGL77_RS05520 (FGL77_05520) - 1135805..1136758 (-) 954 WP_146988827.1 hypothetical protein -
  FGL77_RS05525 (FGL77_05525) - 1137111..1138184 (-) 1074 WP_146988829.1 IS30 family transposase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68684.75 Da        Isoelectric Point: 5.1776

>NTDB_id=377647 FGL77_RS05505 WP_146988825.1 1131388..1133199(-) (pepF) [Loigolactobacillus coryniformis strain CBA3616]
MSTKTLPTREQVPTELTWNLTTVYPSDTDWENAFKEITTLGQDAAKLKGTLGDSARDLSDGLDQIFDLYRKLEKLYVYAS
LKHNQDNDNPTYQGMDQRAGALVAQVSAQVSFLEPEILAIPADELKNYIDSSTNLQVYQHYLEQVTATRKHVLSAEAEEL
LAGASDVFDASAATFNVLNDVDLPFPTVKDAQGNDVELSQGVYGTLIESTNRDVRKQAFQQLYKVYRQFRNTLASTLSSH
IKMHNYQARVHHYDSARQAALSANHIPESVYDTLVAEVEKNLPLLHRYVALRKKILGVDQLHMYDMYTPLTGEPSLSYTY
DEAKAEVLKATKVLGREYTSIVQEAFDTRWIDVVENKGKTSGAYSSGMYDTNPYILLNWQNNLNNLYTLVHEMGHSVHSH
YTHHNQPYVYGDYAIFVAEIASTTNENLLTDYLLKQQTDPRTRAYILNYYLDGFKGTIFRQTQFAEFEHFIHTEDAKGVP
LTAEHLSDYYGKLNQKYYGPAVENDPEIALEWSRIPHFYFNYYVYQYATGFAAATTLADKIINGERADRNAYINYLKSGS
SAYPIAIMQKAGVDMTQPAYLEQAFKVFEQRLNELETLLKNLD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=377647 FGL77_RS05505 WP_146988825.1 1131388..1133199(-) (pepF) [Loigolactobacillus coryniformis strain CBA3616]
ATGTCAACGAAAACATTACCTACGCGTGAGCAGGTGCCCACAGAACTAACTTGGAATCTGACCACGGTTTACCCCAGTGA
TACAGATTGGGAGAACGCTTTTAAAGAAATCACAACGCTGGGGCAGGATGCCGCTAAACTTAAAGGTACCCTTGGCGATA
GCGCACGCGATCTAAGCGACGGTTTGGATCAGATTTTTGATCTTTATCGTAAACTAGAAAAATTATACGTTTATGCTAGT
TTGAAACATAACCAAGATAACGATAACCCCACTTATCAAGGTATGGATCAACGAGCTGGTGCATTAGTAGCACAAGTATC
TGCTCAGGTTTCCTTTTTAGAACCAGAAATTTTAGCGATTCCGGCTGATGAACTGAAAAATTATATTGATAGCAGCACTA
ATTTGCAGGTTTACCAACATTACTTAGAACAAGTTACGGCAACGCGTAAACATGTGCTTTCCGCTGAAGCCGAAGAATTA
TTGGCTGGTGCTAGCGATGTTTTTGATGCTTCTGCCGCAACGTTTAATGTCTTGAACGATGTTGACCTACCATTTCCAAC
CGTTAAAGATGCTCAGGGTAATGATGTTGAATTGTCACAAGGTGTTTATGGAACTTTGATCGAATCAACCAATCGTGACG
TACGTAAGCAGGCGTTCCAACAACTCTATAAAGTTTACCGCCAGTTCCGTAATACACTGGCTTCAACTTTGTCCTCACAC
ATTAAGATGCACAACTACCAAGCGCGAGTTCATCACTATGATTCTGCCCGCCAAGCCGCCCTTTCTGCCAATCATATTCC
CGAAAGCGTTTATGATACGCTAGTCGCTGAGGTCGAAAAAAATCTACCGTTACTGCATCGCTATGTGGCCTTACGCAAAA
AGATCCTTGGGGTCGATCAACTCCACATGTACGATATGTATACGCCTTTGACTGGTGAACCTAGCCTATCTTACACTTAC
GACGAAGCTAAAGCTGAAGTGTTGAAGGCCACCAAAGTGCTGGGTCGTGAATACACCAGTATCGTACAAGAAGCTTTTGA
TACCCGGTGGATCGATGTCGTTGAGAATAAAGGCAAAACAAGTGGTGCCTATTCATCCGGCATGTACGACACTAATCCCT
ACATTTTATTAAACTGGCAGAATAATTTAAACAATCTGTACACGTTAGTTCATGAAATGGGGCATTCAGTCCACAGCCAT
TATACGCACCATAATCAGCCATACGTGTATGGTGACTACGCTATTTTTGTCGCCGAGATTGCTTCAACAACCAACGAAAA
TTTGTTAACTGATTACCTATTAAAGCAACAAACTGATCCACGGACGCGGGCCTACATTCTGAATTATTATTTAGATGGCT
TCAAAGGCACAATTTTCCGGCAAACCCAATTCGCTGAATTCGAGCACTTCATTCATACCGAAGATGCTAAGGGCGTACCG
TTGACTGCAGAACATTTATCTGATTACTATGGTAAATTGAACCAGAAGTATTACGGTCCAGCAGTCGAAAATGATCCCGA
GATTGCTTTGGAGTGGTCACGGATCCCTCATTTCTACTTCAATTACTACGTTTATCAGTACGCAACTGGCTTTGCGGCTG
CCACAACGCTAGCTGATAAAATCATTAATGGTGAACGTGCTGACCGTAACGCCTACATTAATTATTTGAAGTCTGGTAGT
TCCGCTTACCCAATTGCGATCATGCAAAAGGCTGGCGTTGATATGACGCAACCAGCTTACTTGGAACAAGCATTTAAAGT
CTTCGAGCAACGTCTAAACGAATTAGAAACACTATTAAAAAATTTAGACTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8TI62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.547

98.176

0.526

Multiple sequence alignment