Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL78_RS04460 Genome accession   NZ_CP042390
Coordinates   839285..840652 (+) Length   455 a.a.
NCBI ID   WP_080973663.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3626     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 834285..845652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL78_RS04430 (FGL78_04430) - 834606..836030 (-) 1425 WP_146976105.1 aspartate ammonia-lyase -
  FGL78_RS04435 (FGL78_04435) rpiA 836194..836883 (-) 690 WP_048700323.1 ribose-5-phosphate isomerase RpiA -
  FGL78_RS04440 (FGL78_04440) - 836880..837161 (-) 282 WP_010002509.1 GNAT family N-acetyltransferase -
  FGL78_RS04445 (FGL78_04445) - 837387..837926 (+) 540 WP_048700325.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  FGL78_RS04450 (FGL78_04450) - 837935..838399 (+) 465 WP_048700326.1 NUDIX domain-containing protein -
  FGL78_RS04455 (FGL78_04455) - 838417..839298 (+) 882 WP_048700328.1 metallophosphoesterase family protein -
  FGL78_RS04460 (FGL78_04460) radA 839285..840652 (+) 1368 WP_080973663.1 DNA repair protein RadA Machinery gene
  FGL78_RS04465 (FGL78_04465) - 840663..840986 (+) 324 WP_146976107.1 hypothetical protein -
  FGL78_RS04470 (FGL78_04470) gltX 841162..842658 (+) 1497 WP_048700419.1 glutamate--tRNA ligase -
  FGL78_RS04475 (FGL78_04475) - 842794..843699 (+) 906 WP_146977316.1 NADP-dependent oxidoreductase -
  FGL78_RS04480 (FGL78_04480) adhP 843862..844917 (+) 1056 WP_029510101.1 alcohol dehydrogenase AdhP -
  FGL78_RS04485 (FGL78_04485) - 845080..845619 (+) 540 WP_048700335.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49195.34 Da        Isoelectric Point: 5.2629

>NTDB_id=377624 FGL78_RS04460 WP_080973663.1 839285..840652(+) (radA) [Leuconostoc lactis strain CBA3626]
MAKVKTQFICSNCGFTSARYLGRCSNCGEWGTFVEEKILPDTNDRKSRVSLDGRTAKVEKINEVTSEETPRVATNLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAHEGRVLYVTGEESATQVKLRADRLGVGNDEFYLYPETDMTAIKKQ
IESLQPDFVVIDSVQTMQEPDVTSAIGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRDGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTASGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
IRSVADIESRLKEARKLGFKRAIVPKNNLNGVTLPEGIQVIGVATLREALQLALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=377624 FGL78_RS04460 WP_080973663.1 839285..840652(+) (radA) [Leuconostoc lactis strain CBA3626]
ATCGCAAAAGTTAAAACACAATTTATTTGCTCAAACTGTGGTTTCACGTCAGCGCGCTATCTGGGTCGCTGCTCAAACTG
TGGTGAATGGGGCACATTTGTCGAAGAAAAAATTCTGCCAGATACCAACGATCGGAAAAGTCGGGTGAGCCTTGATGGTC
GTACGGCTAAGGTTGAAAAGATTAATGAGGTGACATCAGAGGAAACACCGCGTGTTGCCACGAACCTTAAAGAACTGAAC
CGCGTGTTAGGTGGTGGGGTGGTTCCAGGTTCAATGGTGTTGATTGGTGGGGATCCAGGCATTGGGAAATCAACTCTCTT
GCTCCAAGTCTCTGGGCAATTGGCCCATGAAGGTCGTGTGTTATACGTGACTGGGGAAGAATCTGCCACCCAAGTGAAGC
TACGGGCAGATCGTTTGGGTGTTGGGAATGATGAATTTTACCTCTATCCAGAAACAGATATGACGGCGATTAAAAAGCAA
ATTGAATCGCTGCAACCAGATTTTGTCGTGATTGACTCAGTACAAACGATGCAGGAACCAGACGTGACGTCCGCCATTGG
CTCCGTGTCACAAATCCGAGAAGTTACGGCAGATTTATTGCAAATTGCTAAAACCAATAACATTTCTATTTTTATCGTTG
GTCACGTGACTAAAGATGGGGCGATTGCTGGACCAAAGATTTTAGAGCATATGGTCGATACGGTGCTCTATTTTGAAGGT
GATAGTAACTATAAGTACCGTATTTTACGTGCGGTGAAAAATCGTTTTGGTGCCACCAATGAACTGGGTATTTTTGAAAT
GCGTGACGGCGGCTTGATTGAAGTCGCTAACCCATCAGAAATCTTTTTGGAAGAACGGTTAGCTGGGGCAACTGGGTCGG
CCATTGTGGTCGCCTTAGAAGGTTCACGCCCAATTTTGGTGGAGTTGCAAGCTTTGGTGACGCCCACCGTCTTTGGAAAT
GCGCAACGGACGGCATCCGGATTAGATCGTAACCGTGTGTCGTTAATAATGGCCGTTTTGGAAAAGCGCGCCAATCTCTT
GTTGCAAAATCAAGACGCTTATCTGAAAGCTGCCGGTGGGGTGAAACTGGATGAACCCGCAATTGATTTGGCGATTGCCG
TGGCGCTGGCCAGTTCTTATCACGATAAAGAATCGCGGCCAAGTGACGTCTTTGTCGGTGAAATTGGGTTAACTGGGGAA
ATCCGGAGTGTGGCTGATATTGAAAGTCGGTTGAAGGAGGCGCGCAAGCTTGGCTTTAAACGGGCGATTGTACCAAAGAA
TAACTTGAATGGGGTCACACTCCCTGAAGGGATTCAAGTAATTGGCGTCGCCACGTTACGGGAAGCGTTGCAATTAGCCT
TAGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.962

99.121

0.664
  radA Streptococcus pneumoniae D39

66.962

99.121

0.664
  radA Streptococcus pneumoniae R6

66.962

99.121

0.664
  radA Streptococcus pneumoniae TIGR4

66.962

99.121

0.664
  radA Streptococcus mitis NCTC 12261

66.741

99.121

0.662
  radA Streptococcus mitis SK321

66.741

99.121

0.662
  radA Bacillus subtilis subsp. subtilis str. 168

62.281

100

0.624

Multiple sequence alignment