Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL83_RS02755 Genome accession   NZ_CP042387
Coordinates   548091..549458 (-) Length   455 a.a.
NCBI ID   WP_147000831.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3625     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 543091..554458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL83_RS02730 (FGL83_02730) - 543122..543661 (-) 540 WP_029510102.1 hypothetical protein -
  FGL83_RS02735 (FGL83_02735) adhP 543824..544879 (-) 1056 WP_029510101.1 alcohol dehydrogenase AdhP -
  FGL83_RS02740 (FGL83_02740) - 545042..545947 (-) 906 WP_147001478.1 NADP-dependent oxidoreductase -
  FGL83_RS02745 (FGL83_02745) gltX 546083..547579 (-) 1497 WP_029510099.1 glutamate--tRNA ligase -
  FGL83_RS02750 (FGL83_02750) - 547755..548078 (-) 324 WP_029510098.1 hypothetical protein -
  FGL83_RS02755 (FGL83_02755) radA 548091..549458 (-) 1368 WP_147000831.1 DNA repair protein RadA Machinery gene
  FGL83_RS02760 (FGL83_02760) - 549445..550326 (-) 882 WP_029510097.1 metallophosphoesterase family protein -
  FGL83_RS02765 (FGL83_02765) - 550561..551100 (-) 540 WP_048700325.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  FGL83_RS02770 (FGL83_02770) - 551326..551607 (+) 282 WP_010002509.1 GNAT family N-acetyltransferase -
  FGL83_RS02775 (FGL83_02775) rpiA 551604..552293 (+) 690 WP_147000832.1 ribose-5-phosphate isomerase RpiA -
  FGL83_RS02780 (FGL83_02780) - 552457..553881 (+) 1425 WP_147000833.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49213.37 Da        Isoelectric Point: 5.2659

>NTDB_id=377564 FGL83_RS02755 WP_147000831.1 548091..549458(-) (radA) [Leuconostoc lactis strain CBA3625]
MAKVKTQFICSNCGFTSARYLGRCSNCGEWGTFVEEKIMPETNDRKSRVSLDGRTAKVEKINEVTSEETPRVATNLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAHEGRVLYVTGEESATQVKLRADRLGVGNDEFYLYPETDMTAIKKQ
IESLQPDFVVIDSVQTMQEPDVTSAIGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRDGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTASGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
IRSVADIESRLKEARKLGFKRAIVPKNNLNGVTLPEGIQVIGVATLREALQVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=377564 FGL83_RS02755 WP_147000831.1 548091..549458(-) (radA) [Leuconostoc lactis strain CBA3625]
ATCGCAAAAGTTAAAACACAATTTATTTGCTCAAACTGTGGTTTCACGTCAGCGCGCTATCTGGGGCGCTGCTCAAACTG
TGGTGAATGGGGCACATTTGTCGAAGAAAAAATCATGCCAGAGACCAACGACCGGAAAAGTCGGGTGAGTCTAGACGGTC
GTACGGCTAAGGTTGAAAAGATTAATGAAGTGACATCAGAGGAAACACCGCGTGTTGCCACGAACCTTAAAGAACTGAAC
CGCGTGTTAGGTGGTGGGGTGGTTCCAGGTTCAATGGTGTTGATTGGTGGGGATCCAGGCATTGGGAAATCAACTCTCTT
GCTCCAAGTCTCTGGGCAATTGGCCCATGAAGGTCGTGTGTTATACGTGACTGGGGAAGAATCTGCCACCCAAGTGAAGC
TACGGGCAGATCGTTTGGGTGTTGGGAATGATGAATTTTACCTCTATCCAGAAACAGATATGACGGCGATTAAAAAGCAG
ATTGAATCGCTGCAACCAGATTTTGTCGTGATTGACTCAGTACAAACGATGCAGGAACCAGACGTGACGTCTGCCATTGG
CTCCGTGTCACAAATCCGCGAAGTCACGGCAGATTTATTGCAAATTGCCAAAACCAATAACATTTCTATTTTTATCGTTG
GTCACGTGACTAAAGATGGGGCGATTGCTGGACCAAAGATTTTGGAGCATATGGTCGATACGGTGCTCTATTTTGAAGGT
GATAGTAACTATAAATACCGTATTTTACGGGCGGTGAAAAATCGTTTTGGCGCCACCAATGAATTGGGTATTTTTGAAAT
GCGTGACGGCGGCTTGATTGAAGTGGCGAACCCATCAGAAATCTTTTTGGAAGAACGATTGGCTGGGGCAACTGGGTCGG
CCATTGTGGTCGCCTTGGAAGGCTCGCGGCCAATTTTGGTTGAATTACAGGCTTTAGTGACGCCCACCGTCTTTGGCAAC
GCGCAACGAACGGCTTCCGGGTTAGATCGTAATCGCGTGTCGTTAATAATGGCCGTTTTGGAAAAGCGCGCTAATCTCTT
GTTGCAAAATCAAGACGCTTATCTGAAAGCTGCCGGTGGGGTGAAACTGGATGAACCCGCAATTGATTTGGCGATTGCCG
TGGCACTGGCCAGTTCTTATCACGATAAAGAATCGCGGCCAAGTGACGTCTTTGTCGGTGAAATTGGGTTAACTGGGGAA
ATCCGGAGCGTCGCTGATATTGAGAGCCGGTTGAAGGAGGCGCGCAAACTCGGCTTTAAACGGGCGATTGTGCCAAAGAA
TAACTTGAATGGGGTCACACTCCCTGAAGGAATTCAAGTGATTGGCGTCGCCACATTACGAGAAGCATTGCAAGTAGCCT
TAGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.962

99.121

0.664
  radA Streptococcus pneumoniae D39

66.962

99.121

0.664
  radA Streptococcus pneumoniae R6

66.962

99.121

0.664
  radA Streptococcus pneumoniae TIGR4

66.962

99.121

0.664
  radA Streptococcus mitis NCTC 12261

66.741

99.121

0.662
  radA Streptococcus mitis SK321

66.741

99.121

0.662
  radA Bacillus subtilis subsp. subtilis str. 168

62.281

100

0.624

Multiple sequence alignment