Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL83_RS01770 Genome accession   NZ_CP042387
Coordinates   360946..362736 (-) Length   596 a.a.
NCBI ID   WP_147000736.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3625     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 355946..367736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL83_RS01745 (FGL83_01745) - 356858..357241 (-) 384 WP_029509908.1 VOC family protein -
  FGL83_RS01750 (FGL83_01750) - 357296..358312 (-) 1017 WP_029509909.1 zinc-dependent alcohol dehydrogenase family protein -
  FGL83_RS01755 (FGL83_01755) - 358494..359468 (+) 975 WP_068850726.1 LacI family DNA-binding transcriptional regulator -
  FGL83_RS01760 (FGL83_01760) - 359504..360427 (-) 924 WP_095652372.1 phosphoglycerate dehydrogenase -
  FGL83_RS01765 (FGL83_01765) - 360475..360873 (-) 399 WP_010006087.1 cytidine deaminase -
  FGL83_RS01770 (FGL83_01770) pepF 360946..362736 (-) 1791 WP_147000736.1 oligoendopeptidase F Regulator
  FGL83_RS01775 (FGL83_01775) - 362816..363844 (-) 1029 WP_147000737.1 competence protein CoiA -
  FGL83_RS01780 (FGL83_01780) - 363893..365332 (-) 1440 WP_147000738.1 ABC transporter substrate-binding protein/permease -
  FGL83_RS01785 (FGL83_01785) - 365436..366188 (-) 753 WP_147000739.1 amino acid ABC transporter ATP-binding protein -
  FGL83_RS01790 (FGL83_01790) - 366185..367633 (-) 1449 WP_029509915.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67349.87 Da        Isoelectric Point: 4.3611

>NTDB_id=377559 FGL83_RS01770 WP_147000736.1 360946..362736(-) (pepF) [Leuconostoc lactis strain CBA3625]
MAQLQRDEVPEELTWDLTSIFATDDDWETAYDAVHQGAQALKQFVGHVGDSAQTLQAALEADLDLERQLEKVYVYAHQIY
DQDTTNQKYAAFNSRAQALWSEVSEATAYFQPEVLNIPEETLANYLKTAGLQPYQHLFDQILAQKPYTLPAEQEALLAGA
GDIFNASENTFGALDNSDMTFGDVHTETGEVVPLTNGLYSLLLESKSRELRQEAFETLYDSYIALQNTFASTLSSHVKGH
NYLAKVRHYRSAREAAILPHSLPTSVFETLRETVDANLPLLHRFVSLRKQVLGVDDVHSYDLYVPLVDEIDFDVTYDKAK
DIVLAALAPLGPDYIAVVKKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRQ
AQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGVALTAD
AMSTYYAALNQKYYGPDLFPDEEIAYEWARIPHFYYNYYVYQYATGEAAATTLADRILNQNGAEAYKDYLKAGASDYPLA
VIGQAGVDMTQADYLKEAFGVFEKRLDQLTDLLVHK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=377559 FGL83_RS01770 WP_147000736.1 360946..362736(-) (pepF) [Leuconostoc lactis strain CBA3625]
ATGGCACAACTACAACGCGATGAAGTACCTGAAGAGTTAACTTGGGATTTGACCTCCATTTTTGCAACTGATGACGATTG
GGAAACAGCCTATGATGCCGTGCATCAAGGCGCACAGGCGCTGAAGCAATTTGTGGGGCATGTTGGTGATTCAGCCCAAA
CGTTGCAAGCAGCACTGGAAGCCGATCTTGATTTGGAACGTCAATTAGAAAAAGTCTATGTCTATGCGCACCAAATTTAT
GATCAAGACACAACCAATCAAAAATATGCCGCTTTTAATAGTCGTGCGCAAGCGCTTTGGTCTGAAGTCAGTGAAGCGAC
AGCTTATTTCCAACCAGAAGTGTTGAATATTCCAGAAGAAACGTTGGCGAACTATTTGAAGACGGCAGGGTTGCAACCTT
ACCAACATTTATTTGATCAAATTCTGGCGCAAAAGCCTTACACCTTGCCAGCAGAACAGGAAGCGCTGCTGGCCGGAGCA
GGGGATATTTTTAACGCGTCAGAAAACACTTTTGGTGCGCTAGATAACTCCGACATGACTTTTGGGGATGTCCATACTGA
AACGGGTGAAGTGGTGCCATTAACAAATGGTCTTTACAGCCTGTTGCTGGAATCTAAGTCACGTGAATTGCGCCAAGAAG
CGTTTGAAACCTTGTACGATAGTTACATTGCCTTGCAAAATACTTTTGCGTCAACGTTATCGTCACATGTCAAAGGCCAT
AACTATTTAGCGAAAGTGCGTCACTATCGCTCAGCACGGGAAGCAGCCATTCTGCCACATAGCCTACCCACATCAGTATT
TGAAACGTTACGTGAAACGGTTGATGCCAATTTGCCATTGTTGCATCGCTTTGTATCACTCCGTAAGCAAGTTTTGGGCG
TTGACGATGTGCATTCATACGACCTCTACGTACCGTTGGTCGATGAGATTGATTTTGATGTCACTTATGATAAAGCTAAA
GACATTGTGTTGGCCGCTTTGGCACCATTAGGACCAGACTACATTGCCGTGGTTAAAAAAGCCTTTGACGAACGCTGGAT
TGATGTGGTGGAAAATAAGGGCAAGCGTACTGGCGCTTATTCGAGTGGCACCTATGACACGAACCCCTTTATTTTGTTAA
ATTGGCAAAATAACTTAAATAACGTCTACACTTTGGCCCATGAAATGGGACACTCAGTGCATTCTTATTTGACCCGTCAA
GCACAACCTTATCATTATGGTGATTACCCAATTTTCCTAGCTGAAATTGCGTCAACAACCAATGAAAGCCTACTGACGGA
TTATTTGTTAAAGACAAATGATGATCCAAAATTCCAAGCTTATGTCTTGAATCAGTATCTTGATGGCTTTAAGGGCACGG
TGTTCCGACAGACTCAATTTGCAGAATTTGAAGATTGGATTCATGAACAAAGTGCCGCTGGGGTGGCGTTAACAGCTGAC
GCGATGAGCACGTACTATGCAGCATTGAATCAGAAGTACTATGGGCCAGATCTCTTCCCGGATGAAGAAATCGCGTATGA
ATGGGCCCGTATTCCACATTTCTACTACAATTATTATGTCTATCAGTATGCCACTGGTGAAGCCGCAGCGACGACTTTGG
CTGATCGTATTTTGAACCAGAATGGGGCAGAAGCGTATAAAGACTACTTAAAGGCCGGTGCCTCAGACTATCCATTAGCC
GTTATCGGCCAAGCAGGGGTTGATATGACGCAAGCGGATTATTTGAAGGAAGCCTTTGGCGTGTTTGAAAAGCGTCTCGA
TCAGTTGACAGATTTGTTAGTTCACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

99.161

0.532

Multiple sequence alignment