Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL85_RS04640 Genome accession   NZ_CP042383
Coordinates   918075..919865 (+) Length   596 a.a.
NCBI ID   WP_010278615.1    Uniprot ID   -
Organism   Leuconostoc pseudomesenteroides strain CBA3630     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 913075..924865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL85_RS04620 (FGL85_04610) - 913269..914696 (+) 1428 WP_228934145.1 ABC transporter substrate-binding protein/permease -
  FGL85_RS04625 (FGL85_04615) - 914693..915439 (+) 747 WP_004915796.1 amino acid ABC transporter ATP-binding protein -
  FGL85_RS04630 (FGL85_04620) - 915494..916948 (+) 1455 WP_147651260.1 ABC transporter substrate-binding protein/permease -
  FGL85_RS04635 (FGL85_04625) - 916996..917997 (+) 1002 WP_010278617.1 competence protein CoiA family protein -
  FGL85_RS04640 (FGL85_04630) pepF 918075..919865 (+) 1791 WP_010278615.1 oligoendopeptidase F Regulator
  FGL85_RS04645 (FGL85_04635) - 919924..920316 (+) 393 WP_010278613.1 cytidine deaminase -
  FGL85_RS04650 (FGL85_04640) - 920328..920768 (+) 441 WP_010278612.1 nucleoside 2-deoxyribosyltransferase -
  FGL85_RS04655 (FGL85_04645) - 920768..921697 (+) 930 WP_010278610.1 phosphoglycerate dehydrogenase -
  FGL85_RS04660 (FGL85_04650) - 921761..922129 (+) 369 WP_010278609.1 helix-turn-helix domain-containing protein -
  FGL85_RS04665 (FGL85_04655) pheS 922386..923435 (+) 1050 WP_010278606.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67146.73 Da        Isoelectric Point: 4.4545

>NTDB_id=377545 FGL85_RS04640 WP_010278615.1 918075..919865(+) (pepF) [Leuconostoc pseudomesenteroides strain CBA3630]
MAQQILRSEVPENLTWDLTTIFESDDAFEVAFKSVQSAAKQLSQYIGHVGESATALLAALEADLAAEREFEKVYVYAHQI
FDQDTTNPKYAAYNAQVQSLYAELSAATSFFQPEVLAIPDETLAKYLATDKLTKYQHFFDVLLAQKPHTLPADQEALLAG
ASDIFGASEQTFGALDNSDITFGNVHTETGEVVPLTNGLYSLLLESQNRNLRQEAFTTLYDSYIGLQNTFASTLSAHVKG
HNFLAKARHYDSARQAAVSGNNIPESVFQTLTTTVDENLPLLHRFVALRKKILGVDDVHSYDLYVPLVDEIDFDVTYEKA
QQIVLSALAPLGEDYVAIVQKAFDERWIDVVENKGKRTGAYSSGAYDTKPFILLNWQNNLNNVYTLVHEMGHSVHSYLTR
HNQEYHYGDYPIFLAEIASTTNEGLLTDYLLETNSDPKFRAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSANGTALTA
EVMSDYYAELNQKFYGPDLFPDEAIAYEWSRIPHFYYNFYVYQYATGEAAATTLAERILNGNGAQDYKNYLKSGNSDYAL
NIIQKAGVDMSQAEYLKQAFAVFETRLSELETLLSK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=377545 FGL85_RS04640 WP_010278615.1 918075..919865(+) (pepF) [Leuconostoc pseudomesenteroides strain CBA3630]
ATGGCACAACAAATATTACGTTCCGAAGTTCCTGAAAATTTAACATGGGATCTCACCACCATTTTTGAGTCAGATGATGC
GTTTGAAGTGGCATTCAAGTCAGTTCAATCTGCAGCAAAACAATTAAGCCAATATATTGGTCATGTTGGTGAATCTGCCA
CTGCATTGTTGGCTGCATTAGAAGCAGATCTTGCAGCTGAACGAGAATTTGAAAAAGTCTATGTGTATGCACATCAGATT
TTTGATCAAGACACTACTAATCCTAAATATGCGGCTTATAATGCGCAGGTTCAGAGTTTATATGCGGAGTTGAGTGCAGC
AACGTCATTCTTTCAACCAGAAGTCTTAGCTATTCCTGATGAGACATTGGCAAAATATCTTGCCACAGATAAGTTAACCA
AGTATCAGCATTTTTTTGATGTTTTACTTGCTCAAAAGCCTCATACGTTGCCTGCCGATCAAGAAGCGCTCTTAGCAGGT
GCGAGTGACATTTTTGGTGCGTCCGAGCAAACATTTGGTGCACTTGACAATTCTGATATTACATTCGGCAATGTTCATAC
TGAAACTGGAGAAGTGGTGCCACTGACAAATGGTTTATACTCACTTCTGTTGGAATCACAGAACCGGAATTTACGTCAAG
AAGCTTTTACAACCCTATATGATAGTTATATTGGATTACAAAATACGTTTGCCTCAACCTTATCTGCTCATGTAAAGGGG
CACAATTTTTTGGCTAAGGCTCGCCACTATGATTCAGCCCGCCAAGCTGCTGTTTCAGGAAACAATATTCCTGAAAGTGT
TTTTCAAACACTAACGACAACTGTGGATGAAAACTTACCATTATTACATCGATTTGTTGCGTTGCGTAAGAAAATACTGG
GTGTTGATGATGTACATTCTTATGACTTGTACGTGCCTTTGGTTGATGAAATCGATTTTGATGTCACCTATGAAAAGGCG
CAACAGATTGTCTTATCAGCATTGGCGCCGTTGGGGGAAGATTATGTCGCGATTGTTCAAAAGGCGTTTGATGAGCGATG
GATTGATGTTGTCGAGAATAAAGGTAAGCGTACTGGTGCCTATTCAAGTGGTGCTTATGACACTAAACCATTCATTTTGT
TGAATTGGCAAAATAATTTGAATAATGTTTATACCTTGGTTCATGAAATGGGACATTCCGTTCACTCTTATTTAACACGG
CATAACCAAGAGTATCATTATGGCGATTATCCTATTTTTTTGGCAGAAATTGCCTCAACAACTAATGAAGGATTGTTGAC
GGACTATTTGCTGGAAACAAACAGTGATCCTAAGTTTCGTGCGTATGTTTTAAACCAATACTTAGACGGCTTTAAGGGAA
CGGTATTTCGCCAAACTCAGTTTGCGGAATTTGAACAGTGGATCCACGAACAAAGTGCTAATGGGACTGCTTTAACAGCT
GAAGTTATGAGTGATTATTATGCTGAGTTGAATCAAAAGTTCTATGGACCAGATCTTTTTCCTGATGAAGCTATTGCTTA
TGAATGGTCTCGTATTCCTCATTTTTATTATAATTTCTACGTTTATCAGTATGCTACTGGCGAAGCTGCTGCAACCACAC
TGGCAGAACGTATTTTGAATGGCAACGGTGCTCAAGATTATAAAAACTATTTAAAGTCGGGTAATTCAGATTATGCGTTG
AATATTATTCAAAAAGCAGGTGTCGACATGAGTCAAGCTGAATACTTGAAGCAAGCTTTTGCAGTCTTTGAGACACGACT
ATCTGAATTAGAAACACTGCTATCCAAGTGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.771

99.497

0.515

Multiple sequence alignment