Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL89_RS06535 Genome accession   NZ_CP042374
Coordinates   1296994..1298781 (+) Length   595 a.a.
NCBI ID   WP_014974773.1    Uniprot ID   K0DBA6
Organism   Leuconostoc carnosum strain CBA3620     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291994..1303781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL89_RS06515 (FGL89_06515) - 1292110..1293552 (+) 1443 WP_014974777.1 ABC transporter substrate-binding protein/permease -
  FGL89_RS06520 (FGL89_06520) - 1293549..1294301 (+) 753 WP_014974776.1 amino acid ABC transporter ATP-binding protein -
  FGL89_RS06525 (FGL89_06525) - 1294410..1295843 (+) 1434 WP_014974775.1 ABC transporter substrate-binding protein/permease -
  FGL89_RS06530 (FGL89_06530) - 1295892..1296923 (+) 1032 WP_014974774.1 competence protein CoiA -
  FGL89_RS06535 (FGL89_06535) pepF 1296994..1298781 (+) 1788 WP_014974773.1 oligoendopeptidase F Regulator
  FGL89_RS06540 (FGL89_06540) - 1298856..1299257 (+) 402 WP_014974772.1 cytidine deaminase -
  FGL89_RS06545 (FGL89_06545) - 1299310..1300227 (+) 918 WP_014974771.1 phosphoglycerate dehydrogenase -
  FGL89_RS06550 (FGL89_06550) - 1300296..1301264 (-) 969 WP_014974770.1 LacI family DNA-binding transcriptional regulator -
  FGL89_RS06555 (FGL89_06555) - 1301447..1302463 (+) 1017 WP_014974769.1 zinc-dependent alcohol dehydrogenase family protein -
  FGL89_RS06560 (FGL89_06560) - 1302468..1303196 (+) 729 WP_014974768.1 hypothetical protein -
  FGL89_RS06565 (FGL89_06565) - 1303270..1303653 (+) 384 WP_014974767.1 VOC family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67758.59 Da        Isoelectric Point: 4.6041

>NTDB_id=377509 FGL89_RS06535 WP_014974773.1 1296994..1298781(+) (pepF) [Leuconostoc carnosum strain CBA3620]
MAQPLRNEVPKSLTWDLTTIFSTDEAWQAAFEKIQNDTQKVRQFAGHVGDSAETVQAALEANLALERQLESVHVYANQIY
DQDTTNQKYAAFYARVQGLWATVSEATAYFQPEVLNIPDADLATYLTTDGLKKYAHLFETLKAQKPYTLLADQEALLAGA
SDIFNASENTFGALDNSDIIFGDVHTESGEIVPLTNGLYSLLLESKNRALRQEAFETLYDSYIALQNTFASTLSSHVKGH
NFLARTRHYQSAREAAILPHQVPTTVFQTLIKTVDEHLPLLHRFVSLRKKILNVEDVHSYDLYVPLVDEIDFEVTYEKAK
DIVLAALAPLGEDYLAIVQKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSIHSYLTRH
NQPYYYGDYPIFLAEIASTTNESLLTDYLLKNNDDPKFQAYILNQYLDGFKGTVFRQTQFAEFENWIHEQSAQGEALTAD
KMSTYYGNLNQKYYGNDLFPDEEIAFEWSRIPHFYYNFYVYQYATGEAAATTLAERILNQNGAEAYKNYLKAGSSDYPLN
VIAKAGVDMSQADYLNQAFDVFEERLNQLEMLLKK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=377509 FGL89_RS06535 WP_014974773.1 1296994..1298781(+) (pepF) [Leuconostoc carnosum strain CBA3620]
ATGGCACAACCATTACGTAATGAAGTACCGAAATCTCTGACATGGGATCTCACAACGATTTTTTCGACCGACGAAGCTTG
GCAAGCAGCTTTTGAAAAAATACAAAATGATACTCAGAAAGTTCGCCAATTTGCTGGACATGTTGGTGATTCAGCAGAAA
CAGTACAAGCAGCTTTAGAAGCGAATCTAGCATTAGAACGTCAACTCGAGAGCGTACATGTTTATGCCAATCAAATTTAT
GACCAAGATACGACTAATCAAAAGTATGCGGCTTTTTATGCCCGTGTACAAGGATTATGGGCGACGGTCAGTGAAGCAAC
AGCGTATTTTCAACCAGAAGTGTTGAATATTCCTGATGCGGATTTGGCAACATATTTAACGACCGACGGCTTAAAAAAGT
ATGCACATTTATTTGAGACACTAAAAGCACAAAAGCCATACACATTACTGGCAGATCAAGAAGCACTTCTAGCAGGTGCG
AGTGACATTTTTAATGCTTCTGAAAATACGTTTGGTGCATTGGATAATTCTGATATAATATTTGGCGATGTTCACACTGA
ATCAGGGGAAATTGTACCACTAACTAATGGTTTGTACAGTTTATTATTGGAATCAAAGAATCGAGCTCTGCGACAAGAGG
CTTTTGAAACATTGTATGATAGCTATATAGCCTTACAAAACACATTCGCTTCAACGCTTTCATCACACGTTAAGGGACAT
AACTTTTTAGCTCGAACGCGCCATTACCAATCAGCGCGTGAAGCAGCTATTTTACCACATCAGGTGCCAACAACTGTTTT
TCAAACATTAATTAAGACAGTGGATGAACATTTACCGTTATTACATCGTTTTGTATCTTTACGTAAAAAGATTTTAAATG
TTGAAGATGTACATTCTTATGATTTATATGTACCATTAGTAGATGAAATAGATTTTGAAGTGACATACGAAAAAGCAAAA
GATATTGTTCTGGCAGCGTTAGCGCCATTGGGTGAAGATTATCTAGCCATTGTTCAAAAAGCTTTTGATGAACGATGGAT
TGATGTTGTTGAAAACAAAGGTAAACGGACGGGAGCCTATTCGAGTGGCACATATGATACGAATCCCTTTATTTTATTGA
ACTGGCAAAATAATCTGAATAATGTTTACACATTAGCTCATGAAATGGGCCATTCTATTCATTCTTATTTAACGCGACAT
AATCAACCTTATTACTATGGCGACTATCCAATTTTCTTAGCTGAAATTGCGTCAACAACCAATGAGTCATTACTCACAGA
CTACTTATTGAAAAATAATGATGATCCAAAGTTTCAAGCATATATCCTCAATCAATATTTGGACGGCTTTAAGGGAACGG
TATTTCGTCAAACACAGTTTGCGGAGTTTGAGAATTGGATTCACGAACAAAGTGCTCAGGGTGAAGCTTTAACTGCTGAT
AAAATGAGTACTTATTATGGCAATCTTAATCAGAAGTATTACGGCAATGATTTATTCCCTGATGAAGAAATCGCGTTTGA
ATGGTCGCGCATCCCGCATTTTTATTACAATTTCTATGTTTATCAATATGCCACTGGTGAGGCTGCAGCAACGACTTTAG
CTGAACGTATTCTAAATCAAAATGGTGCAGAAGCTTACAAAAACTATTTGAAAGCCGGTTCATCAGATTATCCTTTGAAT
GTGATTGCGAAAGCCGGTGTTGATATGAGCCAAGCTGATTACTTAAATCAAGCTTTTGATGTATTTGAAGAACGCTTAAA
CCAGTTAGAAATGTTATTAAAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-579)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DBA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.277

99.664

0.521

Multiple sequence alignment