Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL90_RS07270 Genome accession   NZ_CP042371
Coordinates   1507722..1509095 (+) Length   457 a.a.
NCBI ID   WP_010620511.1    Uniprot ID   A0A4R5NNP0
Organism   Secundilactobacillus malefermentans strain CBA3618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1502722..1514095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL90_RS07250 (FGL90_07250) - 1503694..1504698 (+) 1005 WP_404814665.1 DMT family transporter -
  FGL90_RS07255 (FGL90_07255) - 1504824..1505516 (+) 693 WP_147657547.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  FGL90_RS07260 (FGL90_07260) - 1505544..1506893 (-) 1350 WP_147657549.1 aminopeptidase C -
  FGL90_RS07265 (FGL90_07265) - 1507077..1507613 (+) 537 WP_010620510.1 dUTP diphosphatase -
  FGL90_RS07270 (FGL90_07270) radA 1507722..1509095 (+) 1374 WP_010620511.1 DNA repair protein RadA Machinery gene
  FGL90_RS07275 (FGL90_07275) - 1509118..1510320 (+) 1203 WP_010620512.1 PIN/TRAM domain-containing protein -
  FGL90_RS07280 (FGL90_07280) gltX 1510484..1511971 (+) 1488 WP_147657551.1 glutamate--tRNA ligase -
  FGL90_RS07285 (FGL90_07285) cysS 1512110..1513519 (+) 1410 WP_010620514.1 cysteine--tRNA ligase -
  FGL90_RS07290 (FGL90_07290) - 1513528..1513941 (+) 414 WP_010620515.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50036.25 Da        Isoelectric Point: 6.5923

>NTDB_id=377484 FGL90_RS07270 WP_010620511.1 1507722..1509095(+) (radA) [Secundilactobacillus malefermentans strain CBA3618]
MAKAKTQFVCQNCGYHSPRFLGRCPNCGKWNTLVEEVLESESVNRQARVSFSGTHSKPERMSDVSMAEEPRVKTQMNELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSQTGGKVLYVSGEESANQIKMRAGRLNVHSDNLYLYPETDMHSIRN
NIEEMKPEYVVIDSVQTMSEPDVTSAVGSVSQIREVTAELMQIAKTNNITIFVVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMRDSGLQEVKNPSEIFLEERLADATGSSIVVSMEGTRPILVEIQALITPSVFG
NAQRTASGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAMAISIASSYKDQGTDPTECYVGEIGLTG
EIRRVNRIEQRVAEATKLGFKRIFIPKNNLQGWTPPTNEIEVVGVTTIGEALHKILK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=377484 FGL90_RS07270 WP_010620511.1 1507722..1509095(+) (radA) [Secundilactobacillus malefermentans strain CBA3618]
ATGGCAAAAGCAAAGACTCAATTTGTCTGTCAAAACTGTGGGTATCATTCACCACGATTTTTGGGCAGATGTCCTAATTG
TGGAAAGTGGAACACCCTCGTTGAAGAGGTATTGGAGTCAGAGTCTGTGAATCGACAGGCAAGAGTCAGTTTTTCTGGTA
CTCATTCCAAACCGGAGCGAATGTCGGACGTCAGTATGGCCGAGGAGCCCCGTGTTAAAACGCAAATGAACGAGTTAAAC
CGAGTTTTGGGTGGTGGCATCGTTCCTGGATCACTTGTTTTGATTGGTGGCGATCCCGGAATTGGGAAGTCAACGCTTCT
TTTGCAAGTTTCTGGACAGCTCAGCCAGACCGGTGGCAAGGTTTTGTATGTTTCCGGAGAAGAGAGTGCCAACCAGATTA
AAATGCGAGCTGGAAGACTTAACGTTCATAGTGACAATTTATACCTGTATCCCGAAACGGATATGCACTCAATCAGAAAC
AATATTGAAGAGATGAAACCAGAATACGTGGTCATTGATTCTGTTCAAACTATGTCAGAGCCTGATGTAACTTCTGCAGT
TGGATCGGTTTCTCAAATCCGAGAAGTTACTGCAGAATTGATGCAAATTGCTAAGACGAATAACATCACGATTTTTGTCG
TTGGTCACGTGACTAAGGGTGGTGCTATTGCTGGGCCAAAGATTTTGGAACACATGGTGGATACAGTTCTTTACTTTGAG
GGAGATCTTCATCACACGTATCGAATCTTGCGAGCCGTTAAAAACCGATTTGGCTCAACAAATGAACTTGGTATTTTTGA
GATGCGTGATTCTGGTTTACAAGAGGTCAAAAATCCTTCTGAAATCTTTTTGGAAGAGCGACTAGCAGATGCAACGGGGT
CTTCTATCGTAGTTTCAATGGAGGGAACCCGGCCAATTCTAGTTGAAATACAAGCCTTAATTACCCCTTCCGTTTTTGGA
AACGCGCAACGAACTGCTTCAGGTTTGGATAGAAATCGGGTTTCACTAATAATGGCGGTTTTGGAAAAGCGCGCAAATCT
GTTACTTCAAAACCAGGATGCGTACTTAAAGGCGGCTGGTGGCGTTAAACTTGATGAGCCAGCAATTGATTTAGCGATGG
CAATTAGTATTGCTTCCAGCTATAAAGACCAAGGAACTGATCCAACGGAATGCTATGTTGGTGAAATTGGGTTGACGGGC
GAAATTCGCCGGGTTAACCGAATCGAACAACGAGTTGCCGAAGCAACCAAACTTGGATTCAAGCGAATCTTTATTCCTAA
AAATAATCTTCAAGGCTGGACGCCGCCGACTAATGAAATTGAAGTCGTTGGTGTCACAACAATTGGCGAGGCGCTTCATA
AAATTCTGAAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5NNP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

69.518

99.781

0.694
  radA Streptococcus mitis SK321

69.518

99.781

0.694
  radA Streptococcus pneumoniae Rx1

69.298

99.781

0.691
  radA Streptococcus pneumoniae D39

69.298

99.781

0.691
  radA Streptococcus pneumoniae R6

69.298

99.781

0.691
  radA Streptococcus pneumoniae TIGR4

69.298

99.781

0.691
  radA Bacillus subtilis subsp. subtilis str. 168

66.521

100

0.665

Multiple sequence alignment