Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL90_RS01130 Genome accession   NZ_CP042371
Coordinates   228817..230622 (-) Length   601 a.a.
NCBI ID   WP_147656546.1    Uniprot ID   -
Organism   Secundilactobacillus malefermentans strain CBA3618     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 223817..235622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL90_RS01105 (FGL90_01105) - 224865..225503 (+) 639 WP_187240423.1 copper homeostasis protein CutC -
  FGL90_RS01110 (FGL90_01110) - 225529..226428 (-) 900 WP_147656542.1 RluA family pseudouridine synthase -
  FGL90_RS01115 (FGL90_01115) - 226421..227227 (-) 807 WP_010620130.1 NAD kinase -
  FGL90_RS01120 (FGL90_01120) - 227228..227887 (-) 660 WP_010620131.1 GTP pyrophosphokinase family protein -
  FGL90_RS01125 (FGL90_01125) - 228146..228766 (+) 621 WP_147656544.1 DsbA family protein -
  FGL90_RS01130 (FGL90_01130) pepF 228817..230622 (-) 1806 WP_147656546.1 oligoendopeptidase F Regulator
  FGL90_RS01135 (FGL90_01135) - 230665..231726 (-) 1062 WP_187240424.1 competence protein CoiA -
  FGL90_RS01140 (FGL90_01140) - 231789..232511 (-) 723 WP_147656550.1 adaptor protein MecA -
  FGL90_RS01145 (FGL90_01145) - 232799..234082 (+) 1284 WP_010620868.1 ISL3 family transposase -
  FGL90_RS01150 (FGL90_01150) spx 234156..234584 (-) 429 WP_147656552.1 transcriptional regulator Spx -
  FGL90_RS01155 (FGL90_01155) - 234704..235444 (-) 741 WP_147656554.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68668.71 Da        Isoelectric Point: 4.8101

>NTDB_id=377472 FGL90_RS01130 WP_147656546.1 228817..230622(-) (pepF) [Secundilactobacillus malefermentans strain CBA3618]
MVKQLPKRNEVAQTLTWDLSKIYASSDEFELAFNEVQSELPVLAKLKGTLINDSTSLLNALEAILATDRKLEKLYVYTEL
KSDVDTSNSENQALNSRAETLVSDFSASTAWFEPELLAIPEQQLLSMIHNNSELQKYQHYFDVINMQRNHVLSADEEKLL
AGAENIFSSSSRTFGIINDSDLTFPVVSDESGDEVQLSQGIYDTLIKSTDRAVRKQAFERLYEVYGQFKNTLASTLSGEV
KAHNFMAKSHKYVSAKDQALSQNQIPESVFDTLVKTVDAHLPLLHRYVALRKRILNLKELHMYDMYTPITGEPSLSYTYE
EAKATALDALSVFGKDYISHVEEAFSSRWIDVVENKGKRSGAYSSGAYDTAPYMLLNWQNDLDNLYTLVHEMGHSMHSWY
THHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKYDDPKIRAYILNYYLDGFKGTIFRQTQFAEFEQFIHEADAQGNPL
TSDMMTKYYGDLNARYYGNEVSRDPQIGLEWSRIPHFYYNFYVYQYATGFAAATTLANGITHGSKENVQKYLNYLSAGSA
NYPIEVMKSAGVNMTQSTYLEKAFDTFEKRLDEFEKIIENN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=377472 FGL90_RS01130 WP_147656546.1 228817..230622(-) (pepF) [Secundilactobacillus malefermentans strain CBA3618]
ATGGTAAAACAGTTACCAAAAAGAAACGAGGTTGCACAAACGTTAACCTGGGATCTTAGCAAGATTTATGCAAGTAGTGA
TGAATTCGAGTTAGCTTTTAACGAAGTACAAAGTGAGTTACCGGTTTTAGCAAAATTGAAGGGTACTTTAATAAATGATT
CGACTTCTCTCTTAAACGCATTAGAGGCCATTTTAGCAACTGATCGGAAGCTTGAGAAGCTTTATGTGTACACCGAGTTA
AAAAGCGATGTTGATACCTCAAATTCGGAAAATCAGGCACTAAACAGTCGGGCAGAGACCCTGGTTTCTGATTTTTCAGC
AAGTACTGCATGGTTTGAACCAGAACTATTAGCAATTCCGGAGCAACAATTGCTTTCCATGATTCACAATAATTCTGAGT
TACAAAAGTATCAACATTATTTTGATGTGATAAACATGCAAAGGAATCACGTTCTGTCTGCAGATGAAGAAAAACTATTA
GCTGGTGCAGAAAATATTTTTTCCAGTTCTTCTCGAACTTTTGGTATCATAAACGATTCTGATTTAACATTTCCGGTAGT
TTCCGATGAAAGTGGGGATGAAGTTCAACTGTCACAAGGTATTTATGATACGTTAATTAAATCGACCGATCGGGCAGTTC
GTAAGCAAGCTTTTGAACGCCTATATGAAGTCTATGGACAATTTAAAAATACATTGGCTTCAACTTTGTCCGGAGAGGTT
AAAGCCCATAATTTTATGGCTAAGAGCCATAAATATGTAAGTGCCAAAGACCAGGCACTGAGTCAAAACCAAATACCTGA
ATCAGTTTTTGATACCCTAGTAAAAACGGTTGACGCACACTTACCTTTACTACACAGATACGTTGCGCTACGTAAACGAA
TTTTAAATTTAAAAGAGTTGCATATGTATGACATGTATACGCCAATTACAGGAGAACCAAGCCTTTCATACACTTATGAG
GAGGCAAAGGCAACCGCACTCGACGCGTTGAGTGTCTTTGGTAAGGATTATATTTCTCACGTAGAGGAGGCCTTTTCATC
TCGTTGGATTGATGTTGTTGAAAACAAGGGTAAACGGAGTGGGGCCTATTCTTCTGGTGCCTATGATACAGCCCCATATA
TGCTCTTAAATTGGCAAAATGATTTAGATAATCTTTATACTTTAGTCCATGAAATGGGTCATAGCATGCACAGCTGGTAT
ACGCATCATAATCAACCTTACCAGTATGGGGACTATTCGATCTTTGTTGCAGAAATTGCGTCAACGACCAATGAAAATAT
TTTAACTGATTATTTATTAAACAAGTATGATGATCCAAAAATCCGAGCCTATATATTAAATTATTATTTAGATGGATTTA
AGGGAACCATTTTCCGCCAAACGCAATTTGCAGAATTTGAACAATTTATTCATGAAGCCGATGCCCAGGGAAATCCGTTA
ACATCTGACATGATGACTAAATACTATGGTGATTTAAATGCACGGTATTACGGAAATGAAGTCTCTCGAGATCCACAAAT
TGGATTAGAATGGTCCAGAATTCCCCATTTCTATTATAATTTTTACGTTTACCAATACGCCACTGGATTTGCAGCGGCAA
CAACTTTGGCAAATGGGATTACGCATGGATCCAAGGAGAATGTTCAAAAATATCTAAATTATTTGTCAGCCGGAAGCGCC
AATTATCCAATTGAAGTAATGAAATCAGCTGGTGTGAATATGACCCAGTCGACTTATTTGGAAAAGGCATTCGACACGTT
CGAAAAACGATTAGACGAGTTTGAAAAAATAATTGAAAATAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.502

0.503

Multiple sequence alignment