Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   FR838_RS13015 Genome accession   NZ_CP042364
Coordinates   2703698..2704498 (+) Length   266 a.a.
NCBI ID   WP_214285257.1    Uniprot ID   -
Organism   Acinetobacter pittii strain C54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2698698..2709498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS12990 (FR838_12990) - 2699614..2700903 (+) 1290 WP_019767998.1 glycosyltransferase family 4 protein -
  FR838_RS12995 (FR838_12995) - 2700928..2701479 (+) 552 WP_005079131.1 phosphatase PAP2 family protein -
  FR838_RS13000 (FR838_13000) iscX 2701579..2701779 (+) 201 WP_002115051.1 Fe-S cluster assembly protein IscX -
  FR838_RS13005 (FR838_13005) ndk 2701893..2702324 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  FR838_RS13010 (FR838_13010) rlmN 2702448..2703683 (+) 1236 WP_002115097.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  FR838_RS13015 (FR838_13015) pilF 2703698..2704498 (+) 801 WP_214285257.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  FR838_RS13020 (FR838_13020) - 2704489..2705280 (+) 792 WP_002114935.1 helix-turn-helix domain-containing protein -
  FR838_RS13025 (FR838_13025) ispG 2705302..2706417 (+) 1116 WP_002115078.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  FR838_RS13030 (FR838_13030) hisS 2706414..2707706 (+) 1293 WP_002114994.1 histidine--tRNA ligase -
  FR838_RS13035 (FR838_13035) - 2707735..2708433 (+) 699 WP_002114884.1 YfgM family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30099.36 Da        Isoelectric Point: 8.7564

>NTDB_id=377459 FR838_RS13015 WP_214285257.1 2703698..2704498(+) (pilF) [Acinetobacter pittii strain C54]
MSIPKLKTVLCMGIAVAFLVSGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
ANAEKTFIQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=377459 FR838_RS13015 WP_214285257.1 2703698..2704498(+) (pilF) [Acinetobacter pittii strain C54]
TTGAGTATTCCAAAGTTAAAAACGGTTTTATGTATGGGGATTGCAGTTGCATTTCTGGTAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCTGAGAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ACTCAGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCTACTGCAAATATGATGATGGGTATTTTG
CTACAGCAAGAAGGTAGCAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAAAGAGCAATTTCATCTGAACCGGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATATCAAATGGAGCGTTATAATGATGCGGTTGAGCAATTTCGTATTG
CTGGCGCAACATTAGGTTATGACCAACGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCATACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAG
TTACGTGCTTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

93.609

100

0.936
  pilF Acinetobacter baylyi ADP1

76.154

97.744

0.744

Multiple sequence alignment