Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FR838_RS12340 Genome accession   NZ_CP042364
Coordinates   2561181..2563409 (-) Length   742 a.a.
NCBI ID   WP_005079289.1    Uniprot ID   A0AAN4MHP0
Organism   Acinetobacter pittii strain C54     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2556181..2568409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS12320 (FR838_12320) cbpA 2556367..2557323 (-) 957 WP_005079294.1 DnaJ C-terminal domain-containing protein -
  FR838_RS12325 (FR838_12325) - 2557470..2558081 (-) 612 WP_005079293.1 LysE family translocator -
  FR838_RS12330 (FR838_12330) hslO 2558220..2559095 (-) 876 WP_005079292.1 Hsp33 family molecular chaperone HslO -
  FR838_RS12335 (FR838_12335) kefB 2559260..2561104 (-) 1845 WP_005079290.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  FR838_RS12340 (FR838_12340) priA 2561181..2563409 (-) 2229 WP_005079289.1 primosomal protein N' Machinery gene
  FR838_RS12345 (FR838_12345) gspF 2563558..2564763 (+) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  FR838_RS12350 (FR838_12350) gspG 2564787..2565371 (+) 585 WP_005079288.1 type II secretion system major pseudopilin GspG -
  FR838_RS12355 (FR838_12355) - 2565638..2565982 (+) 345 WP_005079286.1 hypothetical protein -
  FR838_RS12360 (FR838_12360) csaA 2566128..2566466 (+) 339 WP_005079284.1 tRNA-binding protein -
  FR838_RS12365 (FR838_12365) lnt 2566468..2568027 (-) 1560 WP_005079282.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84038.76 Da        Isoelectric Point: 8.4603

>NTDB_id=377455 FR838_RS12340 WP_005079289.1 2561181..2563409(-) (priA) [Acinetobacter pittii strain C54]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEHLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHASRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=377455 FR838_RS12340 WP_005079289.1 2561181..2563409(-) (priA) [Acinetobacter pittii strain C54]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGATACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGATCCAAGTGAATCATTTACAGGTACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GATGAAGAACCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCTCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACTGCCCTACCTGCATTATTGCGTCAAGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGCTCTGTTAAACAACAAGATGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAGGGACTAGTCGA
CTGTACGCTTGAACCGCACGACTTTAGCCCATCACCTGTTCAATTGGCACAAATGCCACTTACACTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCAATACCAAGCTTTTTTGTTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTCAAGCAAGGTAAGCAAGTACTGGTATTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTCTATTGCACTCAGGCTTAAATGACTCCA
AACGCTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGAACCCGCTCAGCCATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTCTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCACTGTACCGAGGTCACTTACAAAACTGTCCAGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGTAAATTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAACATGGAATTAGCCAACCTCTTATTGAGCAAATCAAGCATACGTTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTACCCGATCACTGCCCTGAATGTCAGCAAAAAAGCCTAAAAACCCTAGGTGCTGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGGATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAAGGTCACCATTTCCCA
CACGTGACTTTGGTTGCTATTTTAGATATTGATGCTGGGTTACTCAGCGTAGACATTCGTGCGCCAGAACGTACTGCACA
GTTAATTGTACAAGTCGCGGGTCGTGCAGGCCGTGGTGAACATAAAGGCCATGTTTATTTACAAACCCTAAGACCAGATC
ACCCTTTACTGACCACGCTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAAACTCTTGCGGAACGTAAAGTCGCATTA
CTGCCGCCTTACCGTTATGCAGTACTGATACGTGCGGAATCCAAAGATCGTGACTATACCTTGCAATTTTTAAATGAAGC
GGCAGAACATTTACGCCAAATTGCGGGTGAAATTGTTGATATTTGGGGGCCAATTCCAGCCCCTATGGAGCGTAAAGCTG
GACGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTCCATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCATCAAGGCAGCATCAACTTCGACTCTCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.709

100

0.977

Multiple sequence alignment