Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FR838_RS08685 Genome accession   NZ_CP042364
Coordinates   1809489..1810130 (-) Length   213 a.a.
NCBI ID   WP_005078482.1    Uniprot ID   -
Organism   Acinetobacter pittii strain C54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1804489..1815130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS08665 (FR838_08665) aroK 1805404..1805973 (-) 570 WP_002116987.1 shikimate kinase AroK -
  FR838_RS08670 (FR838_08670) pilQ 1805985..1808111 (-) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  FR838_RS08675 (FR838_08675) pilP 1808174..1808701 (-) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  FR838_RS08680 (FR838_08680) pilO 1808713..1809492 (-) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  FR838_RS08685 (FR838_08685) pilN 1809489..1810130 (-) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  FR838_RS08690 (FR838_08690) pilM 1810130..1811188 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  FR838_RS08695 (FR838_08695) ponA 1811350..1813911 (+) 2562 WP_057066741.1 penicillin-binding protein PBP1a -
  FR838_RS08700 (FR838_08700) rrmA 1813968..1814792 (-) 825 WP_005078486.1 putative RNA methyltransferase -
  FR838_RS08705 (FR838_08705) - 1814795..1815127 (-) 333 WP_002116981.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23961.46 Da        Isoelectric Point: 5.4186

>NTDB_id=377440 FR838_RS08685 WP_005078482.1 1809489..1810130(-) (pilN) [Acinetobacter pittii strain C54]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLV
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTITDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=377440 FR838_RS08685 WP_005078482.1 1809489..1810130(-) (pilN) [Acinetobacter pittii strain C54]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGCGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGTG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTCACTGT
TGATGTAGGGGAAATGGGTGTGACTATAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681

Multiple sequence alignment